Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0056
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 29 2.5
02_02_0669 + 12779583-12779675,12779942-12780124,12780266-127804... 29 2.5
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229... 29 3.3
08_02_0873 + 22100124-22100810 28 4.4
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 28 4.4
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146... 28 5.8
03_02_0811 + 11437654-11438958 28 5.8
03_02_0809 + 11419318-11420493 28 5.8
02_01_0065 - 477465-477512,477593-477685,477777-478316,478667-47... 28 5.8
12_01_0635 - 5308765-5309139 27 7.7
11_04_0325 + 16395124-16396794 27 7.7
10_08_0535 + 18613223-18613717,18615858-18616373 27 7.7
>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -2
Query: 461 IHPHVAQDPLQHLDGPCVTGRATEKRRSASKPLKSQHPGSVK*DQRDRNFI 309
+HPHV +P + L P A R S+ ++ Q G ++ +RDR FI
Sbjct: 1448 LHPHVCPEPSRSLSAP-----ANIAARMGSREIRRQFSG-IQIPRRDRQFI 1492
>02_02_0669 +
12779583-12779675,12779942-12780124,12780266-12780481,
12780590-12780952,12781453-12781612,12781724-12781827
Length = 372
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 414 RAVKMLQRILRDMWVDPEILAELDETQKQTLFVKCARNRYED 539
R+V+ L I RD EILA L E K+ V+ N Y+D
Sbjct: 65 RSVEALSYIARDKVPFGEILAHLREYYKEPKIVELCDNSYDD 106
>05_01_0294 -
2291175-2291223,2291591-2292039,2292143-2292211,
2292397-2292449,2292492-2294478
Length = 868
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = -3
Query: 241 PCAREHATARRLHCSLADRFETWFKQKVFTCLQQQASRFVILPHF*DISIGGRDSELILG 62
PC H R + + + ++W +Q++ LQ + + LP I D E+I+G
Sbjct: 368 PCCHGHGHGRSMRSNTSTISDSWIEQEIIPLLQTENE--IPLPF-----IDKLDQEIIVG 420
Query: 61 LVVNRTVKI 35
+ +N K+
Sbjct: 421 MALNILSKL 429
>08_02_0873 + 22100124-22100810
Length = 228
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 322 SRWSYLTEPGCCDLRGFDADLRFSVALPVTQGPSRCCRG-SCATCG 456
+R +Y PGC ++ DAD VTQ + CR CA CG
Sbjct: 116 ARRTYCPYPGCSEMMVADADDEGCAG--VTQSECQACRRLFCARCG 159
>08_01_0004 +
39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 289 CEIGIVSIKFRSRWSYLTEPGCCDLRGF 372
C+ + +I RS W + EPGC L F
Sbjct: 710 CQQNLSNISLRSIWEWYEEPGCYGLELF 737
>12_01_0199 -
1467137-1467172,1467302-1467391,1468304-1468396,
1468488-1469515,1470005-1470552,1470656-1470695,
1473774-1475196
Length = 1085
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 428 AAEDLARHVGGSRDPGRTRRD 490
A E L RHVGGS + G T+RD
Sbjct: 635 AHEFLGRHVGGSANLGYTQRD 655
>03_02_0811 + 11437654-11438958
Length = 434
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 346 PGCCDLRGFDADLRFSVALPVTQGPSRCCRG-SCATCGWIPRSWPNST 486
P C D D S L +T S C+G A+CG P+ WPN T
Sbjct: 114 PACFDQALPYFDPSTSSTLSLTSCDSTLCQGLPVASCG-SPKFWPNQT 160
>03_02_0809 + 11419318-11420493
Length = 391
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 346 PGCCDLRGFDADLRFSVALPVTQGPSRCCRG-SCATCGWIPRSWPNST 486
P C D D S L +T S C+G A+CG P+ WPN T
Sbjct: 67 PACFDQALPYFDPSTSSTLSLTSCDSTLCQGLPVASCG-SPKFWPNQT 113
>02_01_0065 -
477465-477512,477593-477685,477777-478316,478667-478670,
479494-480063,480167-480204
Length = 430
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 428 AAEDLARHVGGSRDPGRTRRD 490
A E L RHVGGS + G T+RD
Sbjct: 160 AHEFLGRHVGGSANLGYTQRD 180
>12_01_0635 - 5308765-5309139
Length = 124
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 232 REHATARRLHCSLADRFETWFKQKVFTCLQQQASRFV 122
R H RRL+ S RF T F++ VF L + + FV
Sbjct: 85 RHHDRFRRLNYSNDPRFHTLFQKAVFQNLYKPSRAFV 121
>11_04_0325 + 16395124-16396794
Length = 556
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 397 ALPVTQGPSRCCRGSCATCGWIPRSWP 477
++ +++ S C SC GW PRS+P
Sbjct: 19 SMRLSRSASSSCGSSCGHGGWGPRSYP 45
>10_08_0535 + 18613223-18613717,18615858-18616373
Length = 336
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 298 GIVSIKFRSRWSYLTEPGCCDLRGFDADLRFSVALPVTQGPSRCCRGSCAT 450
G +F ++ L DLR +D +LR + LPV + P+ CR S ++
Sbjct: 271 GFFESRFAAKQKRLMHARDFDLRRYD-ELRRACGLPVVRTPTSPCRPSSSS 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,033,516
Number of Sequences: 37544
Number of extensions: 310993
Number of successful extensions: 1003
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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