Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0056
(558 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57060| Best HMM Match : W2 (HMM E-Value=2.5) 31 0.84
SB_39482| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13) 30 1.5
SB_372| Best HMM Match : CBM_2 (HMM E-Value=0.00043) 29 2.6
SB_48974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_25503| Best HMM Match : 7tm_1 (HMM E-Value=0.004) 28 5.9
SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23) 27 7.9
SB_3499| Best HMM Match : HAT (HMM E-Value=4.2) 27 7.9
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09) 27 7.9
SB_16792| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_57060| Best HMM Match : W2 (HMM E-Value=2.5)
Length = 152
Score = 30.7 bits (66), Expect = 0.84
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 373 DADLR--FSVALPVTQGPSRCCRGSCATCGWIPRSWPNSTRPRNKRSL*NARGTGTKMAK 546
DA LR + + P + PS S P S P +T+P+ K+S + R K +
Sbjct: 88 DAQLRTPYGLPSPPSSSPSTPFARSKLALPTPPYSTPRTTKPKAKKSAESVRKQIAKTIE 147
Query: 547 PWDD 558
WDD
Sbjct: 148 RWDD 151
>SB_39482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 30.7 bits (66), Expect = 0.84
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 373 DADLR--FSVALPVTQGPSRCCRGSCATCGWIPRSWPNSTRPRNKRSL*NARGTGTKMAK 546
DA LR + + P + PS S P S P +T+P+ K+S + R K +
Sbjct: 88 DAQLRTPYGLPSPPSSSPSTPFARSKLALPTPPYSTPRTTKPKAKKSAESVRKQIAKTIE 147
Query: 547 PWDD 558
WDD
Sbjct: 148 RWDD 151
>SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)
Length = 1134
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 404 Q*HKGRQDAAEDLARHVGGSRDPGRTRRDPETNALCKMREEQVRRW 541
Q H RQD E + G R P + R +L +R EQ++ W
Sbjct: 139 QLHNMRQDRNEAIRSFCGRLRQPVQLNRATRNGSLSLIRREQLQEW 184
>SB_372| Best HMM Match : CBM_2 (HMM E-Value=0.00043)
Length = 630
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 208 IGGPSRAHVRRASGRQ---HYTCFKRIYYNCEIGIVSIKFRSRWSYLTEPGCC-DLRG-F 372
+GGP HV R G Q ++ CF + Y +G++S R R+ G C DL +
Sbjct: 253 VGGP--IHVPRFHGPQNCKYFFCFPFVRYRNSLGLISGTPRYRFGSQDHFGSCKDLHNDY 310
Query: 373 DADLRFSVALPVTQG 417
+ F V L +++G
Sbjct: 311 TIIVDFGVPLVISKG 325
>SB_48974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 463 PRSWPNSTRPRNKRSL*NARGTGTKMAKPWDD 558
P S P +T+P+ K+S + R K + WDD
Sbjct: 120 PYSTPRTTKPKAKKSAESVRKQIAKTIERWDD 151
>SB_25503| Best HMM Match : 7tm_1 (HMM E-Value=0.004)
Length = 196
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 417 PLCYWKGY*ETKIRIKTSQVTASRL 343
P+CYWK Y + K + T SRL
Sbjct: 145 PICYWKVYRKVKHHVTAVMPTLSRL 169
>SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)
Length = 977
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 508 KSVCFWVSSSSARISGSTHMSRKILC 431
++VCFW ++S ++S S K++C
Sbjct: 718 RNVCFWSNASKQKVSMSLCFKIKVMC 743
>SB_3499| Best HMM Match : HAT (HMM E-Value=4.2)
Length = 376
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 419 RQDAAEDLARHVGGSRDPGRTRRDPETNALCKM 517
++ +D RH G DPG+ ++P ++ KM
Sbjct: 151 KRQYVDDYERHQGVRMDPGKIEKNPGLRSVAKM 183
>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
Length = 1396
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 419 RQDAAEDLARHVGGSRDPGRTRRDPETNALCKM 517
++ +D RH G DPG+ ++P ++ KM
Sbjct: 1129 KRQYVDDYERHQGVRMDPGKIEKNPGLRSVAKM 1161
>SB_16792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 7.9
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +1
Query: 190 LRDCSAIGGPSRAHVRRASGRQ---HYTCFKRI-YYNCEIGIVSIKFRSRWSYLTEPGCC 357
LR +G P R H + S RQ F ++ Y + + R LT CC
Sbjct: 13 LRPRKGLGSPGRVHWLQVSARQTNLKPILFPKLRIYFADFPYLHCSINQR--LLTLETCC 70
Query: 358 DLRGFDAD-LRFSVALPVTQGPSRCCR 435
G++ D R S++ P QGPSR R
Sbjct: 71 ---GYEYDRTRKSMSSPNFQGPSRAHR 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,246,160
Number of Sequences: 59808
Number of extensions: 358281
Number of successful extensions: 1047
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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