Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0056
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    33   0.18 
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    30   0.98 
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    30   0.98 
U39742-2|AAM51521.1|  321|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U39742-1|AAK39198.1|  322|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z74029-7|CAA98430.2|  280|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    29   3.0  
Z81537-9|CAB04376.2|  673|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81537-5|CAB04381.2|  673|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF036693-2|AAO61430.1|  113|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z71185-4|CAA94909.2|  483|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 538  SSYLFLAHFTKSVCFWVSSSSARISGSTHMSRKILCSILTA 416
            SS      F K+V  WV S S      TH + K+ C+ILT+
Sbjct: 923  SSLFVSTSFDKTVNVWVFSQSTPTMSLTHHTAKVTCAILTS 963


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 420 VKMLQRILRDMWVDPEILAELDETQKQTLF 509
           + +L  IL    VD E+LA LD+ QKQ LF
Sbjct: 1   MSILSEILTTGHVDEELLAALDDDQKQLLF 30


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 420 VKMLQRILRDMWVDPEILAELDETQKQTLF 509
           + +L  IL    VD E+LA LD+ QKQ LF
Sbjct: 1   MSILSEILTTGHVDEELLAALDDDQKQLLF 30


>U39742-2|AAM51521.1|  321|Caenorhabditis elegans Hypothetical
           protein C25F6.7b protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 445 ATCGWIPRSWPNSTRPRNKRS 507
           + CGW+P    N  RP+ KRS
Sbjct: 53  SNCGWVPMEGGNFDRPKEKRS 73


>U39742-1|AAK39198.1|  322|Caenorhabditis elegans Hypothetical
           protein C25F6.7a protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 445 ATCGWIPRSWPNSTRPRNKRS 507
           + CGW+P    N  RP+ KRS
Sbjct: 54  SNCGWVPMEGGNFDRPKEKRS 74


>Z74029-7|CAA98430.2|  280|Caenorhabditis elegans Hypothetical
           protein C45B11.2 protein.
          Length = 280

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 167 LKPSFEAVCETAVQSAGRRVLTCAGRVAANIIRALNEFIITVKLESSQ*NFGH 325
           L  SF   C   +  A  +   C   +  NI+RA   +++ +K +    NFGH
Sbjct: 149 LYSSFLKECPVEIDGADTKN-ECTPSITYNILRAPTNYLVLLKKQFQDSNFGH 200


>U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical
           protein R09F10.3 protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -2

Query: 464 GIHPHVAQDPLQHLDGPCVTGRATEKRRSASKPLKSQHPGSV 339
           G    VA  P   +DG            SAS P  S+HPGSV
Sbjct: 43  GAPSSVASQPPASVDGKAGAPDEARTASSASNPQGSEHPGSV 84


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 419 RQDAAEDLARHVGGSRDPGRTRRDPETNALCKMREEQVRRWQSP 550
           RQD  ED         DP   RR PE   + +   E+ R+ +SP
Sbjct: 277 RQDQREDRRDRRRSPEDPRERRRSPEDRTVRRRSPERRRQQRSP 320


>Z81537-9|CAB04376.2|  673|Caenorhabditis elegans Hypothetical
           protein F41D3.10 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 226 AHVRRASGRQHYTCFKRIYYNCEIGIVSIKFRSRWSYLTEPGCCDLRGFD 375
           A V+   GR     +K ++YN  I    I   S +SYLT P     RG +
Sbjct: 611 ALVKDCDGRCVLVDYKPVFYNSTIKSYRIFDNSGYSYLTTPKHLTPRGLE 660


>Z81537-5|CAB04381.2|  673|Caenorhabditis elegans Hypothetical
           protein F41D3.5 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 226 AHVRRASGRQHYTCFKRIYYNCEIGIVSIKFRSRWSYLTEPGCCDLRGFD 375
           A V+   GR     +K ++YN  I    I   S +SYLT P     RG +
Sbjct: 611 ALVKDCDGRCVLVDYKPVFYNSTIKSYRIFDNSGYSYLTTPKHLTPRGLE 660


>AF036693-2|AAO61430.1|  113|Caenorhabditis elegans Hypothetical
           protein C49A9.10 protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 388 FSVALPVTQGPSRCCRGSCATCGWI 462
           F++  P+   P  CC+  C +C W+
Sbjct: 23  FNMRPPMEPEPGLCCQEGCESCVWL 47


>Z71185-4|CAA94909.2|  483|Caenorhabditis elegans Hypothetical
           protein C35A5.7 protein.
          Length = 483

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 208 LHCSLADRFETWFKQKVFTCLQQQASRFVILPHF*DISI 92
           ++C+++ +F   F Q   TCL Q+  R   +  F D+ +
Sbjct: 321 IYCAMSRKFRAVFIQIFLTCLPQKIIRKYAMEAFLDVEV 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,473,823
Number of Sequences: 27780
Number of extensions: 256257
Number of successful extensions: 721
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)