Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0056
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 367 GFDADLRFSVALPVTQGPSRCCRGSCATCGWIPRSWPNSTRPRNKRSL 510
           GF A +     L +   PS C         WI RS+ +   P++K +L
Sbjct: 163 GFCAVISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYVHPKDKATL 210


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 367 GFDADLRFSVALPVTQGPSRCCRGSCATCGWIPRSWPNSTRPRNKRSL 510
           GF A +     L +   PS C         WI RS+ +   P++K +L
Sbjct: 158 GFCAVISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYVHPKDKATL 205


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 485 RDPETNALCKMREEQVR 535
           R PE+N+ C ++ E+++
Sbjct: 324 RSPESNSRCSVKREKIK 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,321
Number of Sequences: 438
Number of extensions: 2855
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)