Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0056
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g15420.1 68415.m01764 myosin heavy chain-related 29 2.1
At5g03960.1 68418.m00376 calmodulin-binding family protein 29 2.8
At4g20850.1 68417.m03025 subtilase family protein contains simil... 28 3.7
At3g11850.2 68416.m01453 expressed protein contains Pfam profile... 28 3.7
At3g11850.1 68416.m01452 expressed protein contains Pfam profile... 28 3.7
At2g25250.1 68415.m03021 expressed protein 28 3.7
At2g19090.1 68415.m02229 expressed protein contains Pfam profile... 28 3.7
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea... 28 4.9
At4g10340.1 68417.m01699 chlorophyll A-B binding protein CP26, c... 27 6.4
At5g60490.1 68418.m07586 fasciclin-like arabinogalactan-protein ... 27 8.5
At4g37840.1 68417.m05353 hexokinase, putative similar to hexokin... 27 8.5
At3g60380.1 68416.m06753 expressed protein 27 8.5
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 27 8.5
>At2g15420.1 68415.m01764 myosin heavy chain-related
Length = 957
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 246 TRP-AHVSTRRPADCTAVSQTASKLGL-SKKFSLVYSSKPHGS*FC 115
TRP + + RR DC+AV LGL + F V + HGS C
Sbjct: 348 TRPVSRIEERRTGDCSAVRGRQIVLGLRASYFERVVAPLDHGSSLC 393
>At5g03960.1 68418.m00376 calmodulin-binding family protein
Length = 403
Score = 28.7 bits (61), Expect = 2.8
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = -3
Query: 517 HFTKSVCFWVSSSSARISGSTHMSRKILCSILTALVLLEGLLRNEDPHQNLSSHSIPAPS 338
HF K + V++ + + ++RK L + L ALV L+ ++R + +S+ + S
Sbjct: 99 HFVKKLAPNVAAIKIQSAFRASLARKALRA-LKALVRLQAIVRGRAVRRKVSALLKSSHS 157
Query: 337 NKTNVTEILLR---RFQFHSYNKFV*STYNVGGHSPC 236
NK + + I+ R R + + + V HS C
Sbjct: 158 NKASTSNIIQRQTERKHWSNTKSEIKEELQVSNHSLC 194
>At4g20850.1 68417.m03025 subtilase family protein contains similarity
to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II)
(Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo
sapiens]
Length = 1380
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 508 KSVCFWVSSSSARISGSTHMSRKILCSILTALVLLEGLLRNEDPHQN 368
K + WV S++ T + K L + TAL +L+ L++NE+ N
Sbjct: 1296 KELTKWVDVKSSKYGTLTVLREKRLSRLGTALKVLDDLIQNENETAN 1342
>At3g11850.2 68416.m01453 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 504
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +1
Query: 412 QGPSRCCRGSCATCGWIPRSWPNSTRPRNKRSL 510
+ P +CC C C P SW S + R L
Sbjct: 2 ESPIKCCDCGCDCCSSSPGSWIRSVKKRRHDEL 34
>At3g11850.1 68416.m01452 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 504
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +1
Query: 412 QGPSRCCRGSCATCGWIPRSWPNSTRPRNKRSL 510
+ P +CC C C P SW S + R L
Sbjct: 2 ESPIKCCDCGCDCCSSSPGSWIRSVKKRRHDEL 34
>At2g25250.1 68415.m03021 expressed protein
Length = 155
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 391 RNEDPHQNLSSHSIPAPSNKTNVTEILLR 305
R+ HQ+ SH P+P N TN IL R
Sbjct: 36 RSPSSHQSQISHPPPSPHNHTNHVRILKR 64
>At2g19090.1 68415.m02229 expressed protein contains Pfam profiles:
PF04782 protein of unknown function (DUF632), PF04783
protein of unknown function (DUF630); expression
supported by MPSS
Length = 814
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -3
Query: 379 PHQNLSSHSIPAPSNKTNVTEILLRRF---QFHSYNKF 275
P Q LSSH+IP PS + + + F ++ YN +
Sbjct: 184 PEQRLSSHNIPPPSPQNSQWDFFWNPFSSLDYYGYNSY 221
>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
Length = 1846
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -2
Query: 461 IHPHVAQDPLQHLDGPC-VTGRATEKRRSASKPLKSQHPGSVK*DQRDRNFI 309
+HPHV +P + L+ P +TGR ++ L+S + G V ++RDR F+
Sbjct: 1371 LHPHVCPEPKRLLEAPLNMTGRL------GTRELQSFYSG-VHGNRRDRQFV 1415
>At4g10340.1 68417.m01699 chlorophyll A-B binding protein CP26,
chloroplast / light-harvesting complex II protein 5 /
LHCIIc (LHCB5) identical to SP|Q9XF89 Chlorophyll
A/B-binding protein CP26, chloroplast precursor
(Light-harvesting complex II protein 5) (LHCB5) (LHCIIc)
{Arabidopsis thaliana}; contains Pfam profile: PF00504
chlorophyll A-B binding protein; chlorophyll a/b-binding
protein CP26 in PS II, Brassica juncea, gb:X95727
Length = 280
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 449 HVGGSRDPGRTRRDPETNALCKMRE 523
H GG DP +DPE AL K++E
Sbjct: 201 HPGGPFDPLGLAKDPEQGALLKVKE 225
>At5g60490.1 68418.m07586 fasciclin-like arabinogalactan-protein
(FLA12)
Length = 249
Score = 27.1 bits (57), Expect = 8.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -3
Query: 439 ILCSILTALVLLEGLLRNEDPHQNLSSHSIPAPSNKTNVTEILLRRFQFHSYNKFV*ST 263
+L ++L L G+L P PAP TNVT+IL + QF + + + ST
Sbjct: 8 LLFTVLLLLTTTPGILSQPSPAV------APAPPGPTNVTKILEKAGQFTVFIRLLKST 60
>At4g37840.1 68417.m05353 hexokinase, putative similar to hexokinase
1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
Length = 493
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 415 LVLLEGLLR-NEDPHQNLSSHSIPAPSNKTN 326
L+LL G L NE+P ++ H IP P + N
Sbjct: 108 LLLLRGTLGGNEEPISDVQKHEIPIPDDVLN 138
>At3g60380.1 68416.m06753 expressed protein
Length = 743
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 434 EDLARHVGGSRDPGRTRRDPETNALCKMREEQVRR 538
E ++ VGG+ D R+D + + C + EE +R+
Sbjct: 446 ESISSPVGGADDSTTRRQDLQQKSNCHLLEENIRK 480
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 422 QDAAEDLARHVGGSRDPGRTRRDPETNALCKMREEQVRR 538
Q E+L +H+ RD RTR+ E K +EE VRR
Sbjct: 172 QKEREELEQHLK-DRDTARTRKLTEQTLSKKEKEEAVRR 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,858,862
Number of Sequences: 28952
Number of extensions: 239437
Number of successful extensions: 652
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -