Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0055
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    27   0.13 
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   1.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.7  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.8  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   6.4  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   8.4  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   8.4  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 202 SESTGQATAASMSFG-VSANPKS*STRRLGQW 110
           S STGQ   A+ SFG V++ P S S+  LGQ+
Sbjct: 45  SISTGQRLPANFSFGQVNSPPSSTSSGSLGQF 76


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 34  PYLFKYNQRCLFYHSCWVTGP 96
           PY ++Y Q    YH     GP
Sbjct: 40  PYYYQYLQNAALYHKLQFRGP 60


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 465 GCHQTGFSPSPRRGS 509
           G H TG +PSP  G+
Sbjct: 255 GLHATGSAPSPTAGA 269


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 43  FKYNQRCLFYHSCWVTGPAFVTTT 114
           F +  + +FY    ++G  F+TTT
Sbjct: 224 FSWYSKKVFYSKIIISGSIFMTTT 247


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 532 ERCPSHRPVPFARRSR 579
           ERC   RP+P  +++R
Sbjct: 183 ERCDPDRPLPLDQKAR 198


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 259 AGPRSRDAAASCLHGLK*SSESTGQATAASMSFGVSAN 146
           A P  RD+       L  S+ ST   T AS ++  SAN
Sbjct: 178 AAPHLRDSPNYIKPQLHVSTGSTSSPTIASATYTNSAN 215


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 63  SLLPFVLGDWPRVRHNHWPSRLVDQDFGLALT 158
           S+LP    + P+   NH  + L D D  L +T
Sbjct: 27  SILPETALEAPKSPENHPETELSDSDCDLDVT 58


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 15  NFSLRFTIPIQIQPKMSLLPFVLGDW 92
           N SL   IPI +      + F+ G W
Sbjct: 282 NMSLLTVIPIHVWTSKEKISFLRGFW 307


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,987
Number of Sequences: 336
Number of extensions: 3327
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)