Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0055
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0478 + 8775892-8776377 38 0.005
03_02_0485 - 8808139-8808618 38 0.009
03_02_0484 + 8805053-8805538 38 0.009
03_02_0483 - 8804021-8804485 38 0.009
02_05_0494 + 29486960-29487454 36 0.026
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.035
11_02_0041 - 7669692-7670312 35 0.046
01_01_0229 - 1943473-1943922 35 0.046
01_01_0231 + 1951047-1951499 35 0.061
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 34 0.080
01_01_0227 + 1933247-1933699 34 0.11
03_05_0865 - 28365430-28367640 32 0.32
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 31 0.57
02_01_0222 + 1450233-1450766 31 0.75
02_01_0760 - 5639315-5639685,5640072-5640360 30 1.3
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 30 1.7
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 2.3
05_03_0202 - 9874205-9874762 29 3.0
06_01_0195 + 1512978-1513207,1513938-1513945,1514040-1514197,151... 29 4.0
12_01_0636 + 5363436-5363848,5364041-5364354,5364792-5364817 28 5.3
08_02_1253 - 25602258-25602640,25603305-25603767 28 5.3
07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937... 28 5.3
05_05_0392 + 24629528-24630442 28 5.3
03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870... 28 5.3
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 28 5.3
04_04_0176 - 23329589-23331043 28 7.0
03_06_0199 + 32310272-32311432 28 7.0
02_04_0109 + 19812544-19814474,19814574-19814607 28 7.0
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 28 7.0
09_04_0587 + 18782870-18783828,18784084-18784265,18785283-187856... 27 9.2
06_03_0147 + 17236158-17236808 27 9.2
03_02_0637 - 10009580-10009903,10013314-10014153 27 9.2
>03_02_0478 + 8775892-8776377
Length = 161
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/40 (37%), Positives = 29/40 (72%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKSRRR 520
S +F+RR+ LP+ A PE +++ + +GVLT+T P++ ++
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVPKEEAKK 151
>03_02_0485 - 8808139-8808618
Length = 159
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKSRRR 520
S +F+RR+ LPE PE +++ + +GVLT+T P++ ++
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEPKK 149
>03_02_0484 + 8805053-8805538
Length = 161
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKSRRR 520
S +F+RR+ LPE PE +++ + +GVLT+T P++ ++
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEPKK 151
>03_02_0483 - 8804021-8804485
Length = 154
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKSRRR 520
S +F+RR+ LPE PE +++ + +GVLT+T P++ ++
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEPKK 144
>02_05_0494 + 29486960-29487454
Length = 164
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 404 RQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK--SRRRQGREKGA 541
R V ++ LPE AA + +R++ DGVLT+T P++ +R G K A
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPKRKGKKRHAGNGKAA 152
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 505
S QF+RR+ LPE A + V++ L +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>11_02_0041 - 7669692-7670312
Length = 206
Score = 35.1 bits (77), Expect = 0.046
Identities = 26/68 (38%), Positives = 33/68 (48%)
Frame = +2
Query: 407 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDRSRSQGDQGPE 586
+F RR+ +P GA V +RL DGVLT+T P+ R GRE D GD E
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHR-GREPRVVAID-GAGAGDMEAE 197
Query: 587 RGEPKDAE 610
+ AE
Sbjct: 198 VVKASKAE 205
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.1 bits (77), Expect = 0.046
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 505
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.061
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 505
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 34.3 bits (75), Expect = 0.080
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 416 RRYALPEGAAPETVESRLSSDGVLTIT-APRKSRRRQGREKGAHRTDR 556
RR ALP G+ PE ESR S V + +PR R +GR +G T R
Sbjct: 105 RRKALPNGSDPENEESRSSKMAVRSANISPRGRGRGRGRGRGRPPTKR 152
>01_01_0227 + 1933247-1933699
Length = 150
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKSRRR 520
S +F RR+ LP GA + V + + +GVLT+T P++ ++
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKEETKK 140
>03_05_0865 - 28365430-28367640
Length = 736
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 509 SRRRQGREKGAHRTDRSRSQGDQGPERGE 595
SRR + RE+G DR R +GD+ ERG+
Sbjct: 116 SRRDRDRERGDRDRDRDRERGDRDRERGD 144
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 493 HRAEEVPTPSRERERCPSHRP--VPFARRSRTRARGTQG 603
HR P+P R+R R P + P P R R R R G
Sbjct: 126 HRIRRTPSPYRDRRRIPDYHPRRTPSPHRDRDRDRHAAG 164
>02_01_0222 + 1450233-1450766
Length = 177
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKSRRR 520
S +FVR LP A + V + L + GVLTIT P+ + R+
Sbjct: 129 SERFVRTVRLPPNANTDGVHAALDN-GVLTITIPKDNDRK 167
>02_01_0760 - 5639315-5639685,5640072-5640360
Length = 219
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Frame = +2
Query: 260 IKADKDKFQVNLDVQHFSPEEISVKTADGYI--------VVXXXXXXXXXXXXYISRQFV 415
++ D++++++ +V +++ V DG + VV + + +
Sbjct: 117 VREDEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEKRDVVEEDRGRDGDGECWAAATYH 176
Query: 416 RRYALPEGAAPETVESRLSSDGVLTITAPRKSRRRQ 523
LPE A E + + + DGVL +T PR R++
Sbjct: 177 AGLLLPEDAVAEGITAEVR-DGVLHVTVPRSPERKR 211
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 446 PETVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDRSRSQGDQGPERGEPKD 604
P + SSDG ++PR RRR + H ++R RS D+G + D
Sbjct: 261 PSARDRERSSDGECARSSPR--RRRSRSHERDHDSERDRSDRDRGRHKDREHD 311
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 511 PTPSRERERCPSHRPVPFARRSRTRARGTQGC 606
P R R R P HRP+ RS + R +GC
Sbjct: 364 PQSLRHRSRSPIHRPIRSPSRSISPRRDQEGC 395
>05_03_0202 - 9874205-9874762
Length = 185
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +2
Query: 425 ALPEGAAPETVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDRSRSQGDQG 580
A P+GA P E RL + G A + RRQ R G HR R +G G
Sbjct: 89 ARPDGA-PARRERRLEAAG-----AEEREGRRQERASGGHRAKRRAGRGGGG 134
>06_01_0195 +
1512978-1513207,1513938-1513945,1514040-1514197,
1514990-1515097
Length = 167
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 323 SLPARSAARPD*LGTCPCRPLCWAEVT 243
+LP S A P + P RP CW EVT
Sbjct: 44 ALPTSSGAAPS-ANSQPSRPACWEEVT 69
>12_01_0636 + 5363436-5363848,5364041-5364354,5364792-5364817
Length = 250
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 171 LAAVACPVLSEDYFRPWRQLAAASRDLGPA 260
LA V+ ED+ PW+ +AAA GPA
Sbjct: 122 LAPFTVFVVDEDHLLPWQHIAAAVTSGGPA 151
>08_02_1253 - 25602258-25602640,25603305-25603767
Length = 281
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 500 PRKSRRRQGREK-GAHRTDRSRSQGDQG 580
PR+ RRR G E G R R R GD+G
Sbjct: 146 PRRRRRRSGGESGGGDRVARERRGGDRG 173
>07_03_0725 +
20991640-20992471,20993308-20993418,20993542-20993739,
20993860-20993891,20993943-20994153,20994806-20995043,
20995507-20995657,20996171-20996533
Length = 711
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +3
Query: 132 DQDFGLALTPNDMLAAVACPVLSEDYFRPWRQLAAASRD 248
D+ FGLAL DM A AC F+ R L RD
Sbjct: 75 DRVFGLALCRGDMRDAAACAGCVSGAFQRLRALCGRDRD 113
>05_05_0392 + 24629528-24630442
Length = 304
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 416 RRYALPEGAAPETVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDRSRSQGDQGP 583
RR E A E E+ S T T P +S + R++ + R++ D+GP
Sbjct: 101 RRAVGAERATSEKSEAASESSVATTATGPERSPGKPARKRAVVSGELGRARRDRGP 156
>03_02_0467 +
8707777-8707892,8708030-8708096,8708190-8708260,
8708629-8708746,8708820-8708893,8709278-8709333,
8709448-8709531,8709611-8709698,8709786-8709863,
8710335-8710391,8710606-8711044
Length = 415
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 417 DVTRCLKARRLRLWNRGCHQTGFSPSPRR 503
+ + + A R+RLWN+G F P R+
Sbjct: 189 ETAKVVSANRVRLWNKGVDSESFHPKFRK 217
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -2
Query: 336 VFTEISSGEKCCTSRLTWNLSLSA-FMLGRGHEM 238
+F ++S GE+C ++ T+N+ +SA FM R +M
Sbjct: 401 LFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDM 434
>04_04_0176 - 23329589-23331043
Length = 484
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 491 ITAPRKSRRRQGREKGAHRTDRSRSQGDQGPERGEP 598
+ APR +R R G H + + ++G+ GP G+P
Sbjct: 219 VHAPRAARGRGRGRGGGHGGNSTTARGNVGPPLGDP 254
>03_06_0199 + 32310272-32311432
Length = 386
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 475 RRGSHHHRAEEVPTPSRERERCPSHRPVPFARRSRTRAR 591
RR + H A R R RCP HR R +R R R
Sbjct: 99 RREARRHDALRGAAALRGRVRCPCHRRFAHPRPARRRLR 137
>02_04_0109 + 19812544-19814474,19814574-19814607
Length = 654
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 478 RGSHHHRAEEVPTPSRERERCPSHRP-VPFARRSRTRARGTQG 603
R SH HR V + RC P P R R+R++ ++G
Sbjct: 342 RTSHAHRLSNVSREDKRHTRCSESIPQTPKESRKRSRSKRSRG 384
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 417 DVTRCLKARRLRLWNRGCHQTGFSPSPR 500
+ + A R+RLWN+G F P R
Sbjct: 178 ETAHVISANRIRLWNKGVDSASFHPKFR 205
>09_04_0587 +
18782870-18783828,18784084-18784265,18785283-18785629,
18786497-18786739
Length = 576
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 516 AVKGERKVPIAQTGPVRKEIKDQSEGNPRMPKI 614
AV+G R+VP+ P R+ + Q +G R ++
Sbjct: 2 AVEGRRRVPLPLPPPTRRGKQQQQQGGERARRV 34
>06_03_0147 + 17236158-17236808
Length = 216
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 241 LVTSAQHKGRQGQVPSQSGRAALLAGRDFGED 336
L +A H+ R G +PS AA L GR ED
Sbjct: 38 LEAAASHRQRHGGMPSPGDLAAALRGRLLTED 69
>03_02_0637 - 10009580-10009903,10013314-10014153
Length = 387
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 581 VLDLLANGTGLCDGHLSLSLDGVGTSSA 498
V+ LL+ G GL DG L + GVG A
Sbjct: 186 VMRLLSRGLGLDDGRLQAAFGGVGGEGA 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,473,038
Number of Sequences: 37544
Number of extensions: 413279
Number of successful extensions: 1787
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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