Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0055
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 58 8e-09
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 52 4e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 50 1e-06
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 50 1e-06
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 49 4e-06
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 49 4e-06
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 46 3e-05
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 35 0.047
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_39431| Best HMM Match : Ribosomal_L37ae (HMM E-Value=1.9) 31 1.0
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064) 30 1.3
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24) 29 3.1
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) 29 4.1
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 29 4.1
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 28 5.4
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 28 5.4
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 28 5.4
SB_4570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_26991| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_7957| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09) 27 9.4
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37) 27 9.4
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 57.6 bits (133), Expect = 8e-09
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +2
Query: 269 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 445
D DKFQ+ LDV+ F PEEI+ K +G I V + S++F R Y LPEG
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGVD 60
Query: 446 PETVESRLSSDGVLTITAPRKS 511
++ +R++ DG+L + A +KS
Sbjct: 61 ESSISTRIAEDGMLHVEALKKS 82
Score = 50.4 bits (115), Expect = 1e-06
Identities = 31/89 (34%), Positives = 44/89 (49%)
Frame = +2
Query: 254 PSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALP 433
P+ K D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 92 PATK-DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLP 149
Query: 434 EGAAPETVESRLSSDGVLTITAPRKSRRR 520
+T+ RL DGVL I A ++ R+
Sbjct: 150 REVDMDTLVPRLGKDGVLYIEADKRPLRQ 178
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 52.0 bits (119), Expect = 4e-07
Identities = 32/91 (35%), Positives = 46/91 (50%)
Frame = +2
Query: 227 TRGCIS*PRPSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISR 406
TR C ++ DK + LDV+++ PEEIS+K G I + Y +
Sbjct: 24 TRNCSLAANTEMEGDKVEI-ATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YETS 81
Query: 407 QFVRRYALPEGAAPETVESRLSSDGVLTITA 499
+F R Y LP+G TV SR++ DG+L I A
Sbjct: 82 EFHRSYNLPDGVDVSTVSSRITGDGLLHIEA 112
Score = 25.4 bits (53), Expect(2) = 0.64
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 416 RRYALPEGAAPETVESRLSSDGVLTITAPR 505
R + LP+ +++ SRL DG L I A R
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKR 190
Score = 24.6 bits (51), Expect(2) = 0.64
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 263 KADKDKFQVNLDVQHFSPE 319
K D +F V LDV FSP+
Sbjct: 137 KIDDKRFTVTLDVSSFSPD 155
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = +2
Query: 266 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 442
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 443 APETVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDR 556
V++R+S+ G L I A + G E+ + D+
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEESKGDDK 98
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +2
Query: 275 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 454
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155
Query: 455 VESRLSSDGVLTITAPRKS 511
+ +RL +G L A +++
Sbjct: 156 LTTRLDKEGKLHFEAKKRN 174
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = +2
Query: 266 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 442
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 443 APETVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDR 556
V++R+S+ G L I A + G E+ + D+
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEESKGDDK 98
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +2
Query: 275 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 454
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155
Query: 455 VESRLSSDGVLTITAPRKS 511
+ +RL +G L A +++
Sbjct: 156 LTTRLDKEGKLHFEAKKRN 174
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 48.8 bits (111), Expect = 4e-06
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +2
Query: 266 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 442
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 443 APETVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDR 556
V++R+S+ G L I A + G E+ + D+
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEESKGDDK 98
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = +2
Query: 275 DKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 451
D+ ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297
Query: 452 TVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDR 556
V++R+S+ G L I A + G E+ + D+
Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEEESKGDDK 332
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +2
Query: 275 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 454
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155
Query: 455 VESRLSSDGVLTITAPRKS 511
+ +RL +G L A +++
Sbjct: 156 LTTRLDKEGKLHFEAKKRN 174
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +2
Query: 275 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 454
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 389
Query: 455 VESRLSSDGVLTITAPRKS 511
+ +RL +G L A +++
Sbjct: 390 LTTRLDKEGKLHFEAKKRN 408
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 48.8 bits (111), Expect = 4e-06
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +2
Query: 266 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 442
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 443 APETVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDR 556
V++R+S+ G L I A + G E+ + D+
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEESKGDDK 98
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +2
Query: 275 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 454
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155
Query: 455 VESRLSSDGVLTITAPRKS 511
+ +RL +G L A +++
Sbjct: 156 LTTRLDKEGKLHFEAKKRN 174
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +2
Query: 266 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 442
A K+ ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 2 AKKNTLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGI 60
Query: 443 APETVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDR 556
PE V SR+S+ G L I A RK+ + E + D+
Sbjct: 61 DPENVTSRISNHGHLHIEA-RKALPKPEAELEKAKEDK 97
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +2
Query: 263 KADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 442
KA +DKF + +DV F PE I V+ ++V Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150
Query: 443 APETVESRLSSDGVLTITAPR 505
+++ +RL +G L A +
Sbjct: 151 DMDSLTTRLDKEGKLHFEAKK 171
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +2
Query: 269 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 445
+++K ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62
Query: 446 PETVESRLSSDGVLTITAPRKSRRRQGREK 535
V++R+S+ G L I A + G +K
Sbjct: 63 ASNVKTRISNHGQLHIEAMKALPEPDGAKK 92
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +2
Query: 275 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 454
DKF + +DV+ F PE I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFILPREVDMDS 155
Query: 455 VESRLSSDGVLTITAPRKS 511
+ +RL +G L A +++
Sbjct: 156 LTTRLDKEGKLHFEAKKRN 174
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 35.1 bits (77), Expect = 0.047
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 269 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPE 436
D KF + LDV F PEE+ VK G+ + + +RQF R + LP+
Sbjct: 24 DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPQ 78
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 242 RCSRELSPRSEVVFGEHWTGDGSQHVVRG*RQP 144
R SR SP + FG TGDG QH+V+ +P
Sbjct: 100 RASRTPSPSDSIDFGAVETGDGLQHLVKERARP 132
>SB_39431| Best HMM Match : Ribosomal_L37ae (HMM E-Value=1.9)
Length = 186
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 503 RKSRRRQGREKGAHRTDRSRSQGDQGPERGE---PKDAENK*GGF 628
R + R+GR+ G RT++ +QG QG R + KD E + GF
Sbjct: 56 RVCKDREGRKSGFARTEKVANQGLQGQRRSQIRVCKDREGRKSGF 100
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 503 RKSRRRQGREKGAHRTDRSRSQGDQGPERGE---PKDAENK*GGF 628
R + R GR+ G RT++ +QG QG R + KD E + GF
Sbjct: 24 RVCKDRVGRKSGFARTEKVANQGLQGQRRSQIRVCKDREGRKSGF 68
>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
Length = 265
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 475 RRGSHHHRAEEVPTPSRERERCP 543
R+G H HR P+P R R R P
Sbjct: 189 RKGKHRHRDSSSPSPPRHRSRSP 211
>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2492
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +3
Query: 486 SPSPRRGSPDAVKGERKVPIAQTGPVRKEIKDQSEGNPR 602
+PSPR P V+ ER++ ++Q+GP + + +++ PR
Sbjct: 1382 TPSPRSVKP-VVRSERRIKLSQSGPSSEMTEQKAQTLPR 1419
>SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +2
Query: 497 APRKSRRRQGREKGAHRTDRSRSQGDQGPE 586
A RR + R++GA +++ +R++G++GPE
Sbjct: 352 ATPSQRRLEARKRGALKSEGTRTEGNRGPE 381
>SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24)
Length = 440
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 484 SHHHRAEEVPTPSRERERCPSHRPVPFARRSRTRARGT 597
+HHH + V P R + SH+P P R+ G+
Sbjct: 107 AHHHSLQTVTKPKARRTKPSSHQPTPSKIRAGCLCSGS 144
>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
Length = 625
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 508 VPTPSRERERCPSHRPVPFARRSRTRARGTQG 603
VP RE+ + PSHR P AR R++A G
Sbjct: 423 VPAMFREKPKKPSHRLSPPARAVRSQASSASG 454
>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1845
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 452 TVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDRSRSQGDQGPERGEPKDAENK 616
TV R + T K Q K +H +RSR +G G + PK A+NK
Sbjct: 1185 TVPVRELRNSTRKTTKELKKSSLQKSRKNSHDAERSRGKGRNGKQTQRPK-AQNK 1238
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 484 SHHHRAEEVPTPSRERERCPSHRPVP 561
+HHH + V P R + SH+P P
Sbjct: 1654 AHHHSLQTVTKPKARRTKPSSHQPTP 1679
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = +3
Query: 453 LWNRGCHQTGF----SPSPRRGSPDAVKGERKVPIAQTGPVRKEIKDQSEGNPRMPKISR 620
L C +G SPS GSP V+ E A+ G + K S + R+P S+
Sbjct: 551 LGGNNCEDSGIGFTNSPSSSEGSPSPVRQEEASQGARNGKDTSKQKHDSASDKRLPHTSK 610
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 461 SRLSSDGVLTITAPRKSRRRQGREKGAHRTDRSRSQGDQGPERGEPKDAENK 616
SR DG T P R +GR++ +RT RSR D+ E ++A+N+
Sbjct: 204 SRSDDDG-RTRRGPVWDRIGRGRDRDNNRTGRSRGHRDRYQEGRFSREAKNR 254
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 454 CGIAAVIRRGSHHHRAEE 507
CG++ ++RRG +HH EE
Sbjct: 23 CGVSRILRRGYNHHLNEE 40
>SB_4570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 491 ITAPRKSRRRQGREKGAHRTDRSRSQGDQGPERGE 595
I A + R +GR +G R R R +G GP+ G+
Sbjct: 14 IAAALAAARGRGRGRGRGRRGRGRGRGRGGPDAGQ 48
>SB_26991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 529 RERCPSHRPVPFARRSRTRA 588
R RCPS+ +P+ R S TR+
Sbjct: 81 RTRCPSYTSIPYVRGSTTRS 100
>SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 163 TTCWLPSPVQCSPKTTSDRGDNSRL---HLVTSAQHKGRQGQVPSQSGRAALL 312
TT LPSP + T D L HL T++QH+ + + P R LL
Sbjct: 112 TTPTLPSPNNTNTTITQQHHDQPHLHYHHLTTTSQHQAYRYRRPRGGARYQLL 164
>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 511 PTPSRERERCPSHRPVPFARRS 576
P+P RER + PSHRPV + RS
Sbjct: 556 PSP-RERSQAPSHRPVARSPRS 576
>SB_7957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 331 HRNLFRREVLHVQIDLELVLVGLYAGPR 248
H LFR VL VQI+ L+GL G R
Sbjct: 28 HHTLFRGHVLRVQIENGTFLMGLSIGHR 55
>SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)
Length = 1111
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 510 PDAVKGE-RKVPIAQTGPVRKEI 575
PD KGE RKVP+A P++ EI
Sbjct: 298 PDVFKGEVRKVPLAVREPLKNEI 320
>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
Length = 1481
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 485 LTITAPRKSRRRQGREKGAHRTDRSRSQGDQGPE 586
L +PR ++R+ K R D+ +S G GPE
Sbjct: 164 LRARSPRMRQQRERDRKLKRRKDKKKSSGGSGPE 197
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,493,484
Number of Sequences: 59808
Number of extensions: 448937
Number of successful extensions: 1607
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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