Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0055
         (628 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock p...    99   1e-22
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    24   4.5  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   4.5  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   6.0  

>AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock
           protein protein.
          Length = 133

 Score = 98.7 bits (235), Expect = 1e-22
 Identities = 53/124 (42%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
 Frame = +2

Query: 257 SIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPE 436
           ++   KDKFQ+NLDVQ FSPEEISVK  D  ++V            Y+SR FVRRY LP+
Sbjct: 7   AVNISKDKFQINLDVQQFSPEEISVKYVDNCVLVEGKHEEKQDDHGYVSRHFVRRYMLPK 66

Query: 437 GAAPETVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDRSRSQ----GDQGPERGEPKD 604
           G     + S LSSDG+LTIT PRK   ++  E+    T   +      G   PE G  K 
Sbjct: 67  GHNEADIVSSLSSDGILTITCPRKEIEQKNEERSIPITHTGQPMKQVTGKAAPENGHSKK 126

Query: 605 AENK 616
              K
Sbjct: 127 EGEK 130


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 440 AAPETVESRLSSDGVLTITAPRKSRRRQGREKGAH 544
           AAP    S  SS G+  +TAP  +++      G +
Sbjct: 546 AAPNNSNSSDSSSGISAMTAPSPNQQAAAHNHGQY 580


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 487 HHHRAEEVPTPSRERERCPSHRPVPFARRSRTR 585
           H H+ +  P   R   + P+HR  P  RR+  R
Sbjct: 218 HRHQHQLQPQQRRFHRQSPAHRRKPRWRRAGRR 250


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 187 QATAASMSFGVSANPKS*STRRLGQWL*RTRG 92
           ++ A   S G  A PK+   + +G W   TRG
Sbjct: 139 RSMAGFRSLGSGAPPKAQGGKHVGNWEQHTRG 170


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,733
Number of Sequences: 2352
Number of extensions: 13458
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)