Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0055
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.60 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.6  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    22   5.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +2

Query: 425 ALPEGAAPETVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDRSRSQGDQGPERGEPKD 604
           A P      +  +   + G  TI   R  +RRQ   +GA   D      ++   RG+  +
Sbjct: 239 ATPSAVVATSNATAAMTTGTTTIPTRRLRKRRQNDGEGADDRDDDEENEEEEDGRGQ-SE 297

Query: 605 AENK 616
           AE +
Sbjct: 298 AEKR 301


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +3

Query: 429 CLKARRLRLWNRGCHQTGFSPSPRRGSPDAVKGERKVPIAQTGP 560
           CL  R++++W +         +  +G+P +  G+ ++   QT P
Sbjct: 308 CLTERQIKIWFQNRRMKWKKENKSKGTPGSGDGDTEIS-PQTSP 350


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 513 DAVKGERKVPIAQTGPVRKEIKDQSEGNPRMPKISRV 623
           D +  E  +PI +TG   K I ++ E    + KI+++
Sbjct: 153 DIINPEDVIPIRRTGEGSKPIFEREEIKNVLTKINKI 189


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 565 RTGPVCAMGTFLSPLTASGLPRRGDGEN 482
           +T P  A+   +SP+  SG    G  EN
Sbjct: 581 KTSPNSAVRKCMSPINGSGASGSGSAEN 608


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 304 LHVQIDLELVLVGLYAGPRSRDAAASCLHGLK*SSESTGQATAASMSFGVSANPK 140
           LH+QI + +    + AG         CL G   ++ S  +AT+ +M   +S + K
Sbjct: 513 LHLQIRVGVHSGAVVAGIVGLKMPRYCLFGDSVNTASRMEATSQAMQIHISQSTK 567


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 384 TSTGIFQGSSSDVTRCLKARRLRLWNRGC 470
           T   +F G  SD+      + L +W  GC
Sbjct: 241 TLVTMFTGLKSDIPPVAYVKALDVWMAGC 269


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 500 PRKSRRRQGREKGAHRTDRSRSQGDQGPERGEP 598
           P  +++ Q    GA     S  Q  Q P+RG P
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSP 39


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 551 DRSRSQGDQGPERGEPKDAEN 613
           D  + Q  Q   RG P+D+EN
Sbjct: 31  DNDKEQSAQVCYRGAPQDSEN 51


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 551 DRSRSQGDQGPERGEPKDAEN 613
           D  + Q  Q   RG P+D+EN
Sbjct: 31  DNDKEQSAQVCYRGAPQDSEN 51


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 46  KYNQRCLFYHSCWVTGPAFVTTTGPVVLLIKIS 144
           +Y+   +++H     G   +   GP VLL+ +S
Sbjct: 199 EYSMLLVYFHLQRHMGNFLIQVYGPCVLLVVLS 231


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 455  VESRLSSDGVLTITAPRKSRRRQGREKGAHRTDRSRSQGD 574
            V     S+ VLT+     +   +GR  G  R +  RS  D
Sbjct: 1199 VPGESESETVLTLAWSESNVESKGRLLGFWRVEMPRSNAD 1238


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 601 LGFPSLWSLISLRTGPVCAMGTFLSPLTASGLP 503
           + F +  + I   + P  A+ T L  LTA GLP
Sbjct: 427 VSFTATLASIGAASIPSAALITMLIVLTALGLP 459


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,879
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)