Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0055
(628 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote... 34 0.089
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS... 33 0.12
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS... 33 0.16
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote... 33 0.21
At4g15410.1 68417.m02355 UBX domain-containing protein low simil... 31 0.83
At1g03910.1 68414.m00376 expressed protein low similarity to cac... 31 0.83
At2g45850.2 68415.m05703 DNA-binding family protein contains a A... 30 1.4
At2g45850.1 68415.m05702 DNA-binding family protein contains a A... 30 1.4
At5g27860.1 68418.m03342 expressed protein 29 2.5
At4g14830.1 68417.m02280 expressed protein 29 2.5
At5g38190.1 68418.m04602 myosin heavy chain-related 29 3.3
At2g17040.1 68415.m01967 no apical meristem (NAM) family protein... 29 3.3
At1g33520.1 68414.m04148 KOW domain-containing protein / D111/G-... 28 4.4
At3g16450.2 68416.m02094 jacalin lectin family protein similar t... 28 5.8
At3g16450.1 68416.m02093 jacalin lectin family protein similar t... 28 5.8
At1g26140.1 68414.m03191 hypothetical protein 27 7.7
>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
(HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
crystallin family; identified in Scharf, K-D., et al,
Cell Stress & Chaperones (2001) 6: 225-237.
Length = 153
Score = 33.9 bits (74), Expect = 0.089
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKSRRR 520
S QF RR+ LPE + V++ + +GVLT+T P+ ++
Sbjct: 105 SGQFTRRFRLPENVKMDQVKAAM-ENGVLTVTVPKAETKK 143
>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
(HSP18.1-CI) identical to 18.2 kDa class I heat shock
protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
contains Pfam profile: PF00011 Hsp20/alpha crystallin
family
Length = 161
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKSRRR 520
S +F+RR+ LPE A E V++ + +GVLT+ P+ ++
Sbjct: 111 SGKFMRRFRLPENAKMEEVKATM-ENGVLTVVVPKAPEKK 149
>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
(HSP17.4-CI) identical to 17.4 kDa class I heat shock
protein SP:P19036 from [Arabidopsis thaliana]
Length = 156
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 505
S +F+RR+ LPE A E V++ + +GVL++T P+
Sbjct: 108 SGKFMRRFRLPENAKVEEVKASM-ENGVLSVTVPK 141
>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
(HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
(GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
17 (19), 7995 (1989))
Length = 157
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 401 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKSRRR 520
S +F RR+ LPE A E +++ + +GVL++T P+ ++
Sbjct: 109 SGKFTRRFRLPENAKMEEIKASM-ENGVLSVTVPKVPEKK 147
>At4g15410.1 68417.m02355 UBX domain-containing protein low
similarity to XY40 protein [Rattus norvegicus]
GI:2547025; contains Pfam profile PF00789: UBX domain
Length = 421
Score = 30.7 bits (66), Expect = 0.83
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 499 AEEVPTPSRERERCPSHRPVPFARRSR 579
+E P+PSR R PS R P+ RSR
Sbjct: 82 SETSPSPSRSRSASPSSRAAPYGLRSR 108
>At1g03910.1 68414.m00376 expressed protein low similarity to cactin
[Drosophila melanogaster] GI:7673675; expression
supported by MPSS
Length = 672
Score = 30.7 bits (66), Expect = 0.83
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = +2
Query: 404 RQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDRSRSQGDQGP 583
RQ RR G+ E+ S SDG ++ PR SRR++G + RT R S D
Sbjct: 14 RQKKRRDESESGSESESYTS--DSDGSDDLSPPRSSRRKKG--SSSRRTRRRSSSDDSSD 69
Query: 584 ERGEPK 601
G K
Sbjct: 70 SDGGRK 75
>At2g45850.2 68415.m05703 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 348
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 452 TVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDRSRSQGDQGP 583
+V LSS V TIT ++R +GR G+ + R S G+ P
Sbjct: 112 SVSLALSSSSVSTITPNNSNKRGRGRPPGSGKKQRMASVGELMP 155
>At2g45850.1 68415.m05702 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 348
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 452 TVESRLSSDGVLTITAPRKSRRRQGREKGAHRTDRSRSQGDQGP 583
+V LSS V TIT ++R +GR G+ + R S G+ P
Sbjct: 112 SVSLALSSSSVSTITPNNSNKRGRGRPPGSGKKQRMASVGELMP 155
>At5g27860.1 68418.m03342 expressed protein
Length = 177
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 484 SHHHRAEEVPTPSRERERCPSHRPVPFARRSRTRARG 594
S H+ E P ++++ER SHR R R + G
Sbjct: 81 SRRHKKHEKPKKAKDKERSKSHRHKRHKNRERKKGEG 117
>At4g14830.1 68417.m02280 expressed protein
Length = 152
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 413 VRRYALPEGAAPETVESRLSSDGVLTITAPR 505
V R+ LPE PE V DG L +T P+
Sbjct: 109 VWRFRLPESTRPELVTVDCDGDGELIVTVPK 139
>At5g38190.1 68418.m04602 myosin heavy chain-related
Length = 969
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 372 KRRKTSTGIFQGSSSDVTRCLKARRLRLWNRGCHQTGFSPSPRRGSPDAVKGERKVPIAQ 551
K +K ++G + +DVTR KAR + + +G +G S R PD +R +
Sbjct: 370 KTKKGTSGAERRDVTDVTRVDKARPITVGQKG--SSGRSVDRERSGPDTFGSKRPCSSKE 427
Query: 552 TGP 560
P
Sbjct: 428 VAP 430
>At2g17040.1 68415.m01967 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to petunia NAM (X92205) and A. thaliana
sequences ATAF1 (X74755) and ATAF2 (X74756); probable
DNA-binding protein
Length = 250
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +3
Query: 189 PVLSEDYFRPWRQLAAASRDLGPA*RPTRTSSKSIWTCSTSRRK 320
P LS R W R G RP+RT+ K W + S RK
Sbjct: 26 PGLSRIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRK 69
>At1g33520.1 68414.m04148 KOW domain-containing protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00467: KOW motif
Length = 462
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 485 LTITAPRKSRRRQGREKGAHRTDRSRSQGDQGPERGEPKDAENK 616
L + K ++ GR +GA R RS + + +RG+ ++ + K
Sbjct: 297 LQLNDREKDKKTSGRGRGAERGSRSEVRASEKQDRGQTRERKVK 340
>At3g16450.2 68416.m02094 jacalin lectin family protein similar to
SP|Q9SAV1 Myrosinase binding protein-like At1g52030
{Arabidopsis thaliana}; contains Pfam profile: PF01419
jacalin-like lectin domain
Length = 300
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/85 (25%), Positives = 32/85 (37%)
Frame = +1
Query: 82 WVTGPAFVTTTGPVVLLIKISGWR*PRTTCWLPSPVQCSPKTTSDRGDNSRLHLVTSAQH 261
+ G F TTT PV K+S T W K +G + + V +
Sbjct: 138 YALGAYFATTTTPVTPAKKLSAIGGDEGTAWDDGAYDGVKKVYVGQGQDG-ISAVKFEYN 196
Query: 262 KGRQGQVPSQSGRAALLAGRDFGED 336
KG + V + G+ LL +F D
Sbjct: 197 KGAENIVGGEHGKPTLLGFEEFEID 221
>At3g16450.1 68416.m02093 jacalin lectin family protein similar to
SP|Q9SAV1 Myrosinase binding protein-like At1g52030
{Arabidopsis thaliana}; contains Pfam profile: PF01419
jacalin-like lectin domain
Length = 300
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/85 (25%), Positives = 32/85 (37%)
Frame = +1
Query: 82 WVTGPAFVTTTGPVVLLIKISGWR*PRTTCWLPSPVQCSPKTTSDRGDNSRLHLVTSAQH 261
+ G F TTT PV K+S T W K +G + + V +
Sbjct: 138 YALGAYFATTTTPVTPAKKLSAIGGDEGTAWDDGAYDGVKKVYVGQGQDG-ISAVKFEYN 196
Query: 262 KGRQGQVPSQSGRAALLAGRDFGED 336
KG + V + G+ LL +F D
Sbjct: 197 KGAENIVGGEHGKPTLLGFEEFEID 221
>At1g26140.1 68414.m03191 hypothetical protein
Length = 162
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 239 CSRELSPRSEVVFGEHWTGDG 177
C + L P E V EHW+G+G
Sbjct: 94 CGKTLQPTMEDVKEEHWSGNG 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,105,286
Number of Sequences: 28952
Number of extensions: 295169
Number of successful extensions: 967
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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