Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0050
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56690.1 68418.m07076 F-box family protein contains F-box dom...    27   9.6  
At1g63260.1 68414.m07152 senescence-associated family protein si...    27   9.6  

>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 163 LEIASDEGFMYQEKISR*MKVTWALNVFFNFKLFQTIISSILVKIWKY 20
           LEI++ + F Y+EKI   + V+W+ N     K F   + +  VK W Y
Sbjct: 329 LEISNSKSF-YKEKIGEYLPVSWSKNQGSVPKCFLNSLETFRVK-WYY 374


>At1g63260.1 68414.m07152 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 284

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 121 ISR*MKVTWALNVFFNFKLFQTIISSIL 38
           +++ MK  W L   FN  LF  +ISS+L
Sbjct: 221 VAQYMKTEWRLVAIFNVVLFVVLISSLL 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,975
Number of Sequences: 28952
Number of extensions: 322047
Number of successful extensions: 593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)