Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0049
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    24   0.90 
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    24   0.90 
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    24   0.90 
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    24   0.90 
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    24   0.90 
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    24   0.90 
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    24   0.90 
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    24   0.90 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.7  

>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 8   NITNDYNFVTIFPYNVNNNF 67
           +++N+YN+     YN NNN+
Sbjct: 84  SLSNNYNYSNYNNYNNNNNY 103


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 8   NITNDYNFVTIFPYNVNNNF 67
           +++N+YN+     YN NNN+
Sbjct: 84  SLSNNYNYSNYNNYNNNNNY 103


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 8   NITNDYNFVTIFPYNVNNNF 67
           +++N+YN+     YN NNN+
Sbjct: 84  SLSNNYNYSNYNNYNNNNNY 103


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 8   NITNDYNFVTIFPYNVNNNF 67
           +++N+YN+     YN NNN+
Sbjct: 84  SLSNNYNYSNYNNYNNNNNY 103


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 8   NITNDYNFVTIFPYNVNNNF 67
           +++N+YN+     YN NNN+
Sbjct: 84  SLSNNYNYSNYNNYNNNNNY 103


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 8   NITNDYNFVTIFPYNVNNNF 67
           +++N+YN+     YN NNN+
Sbjct: 84  SLSNNYNYSNYNNYNNNNNY 103


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 8   NITNDYNFVTIFPYNVNNNF 67
           +++N+YN+     YN NNN+
Sbjct: 84  SLSNNYNYSNYNNYNNNNNY 103


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 8   NITNDYNFVTIFPYNVNNNF 67
           +++N+YN+     YN NNN+
Sbjct: 84  SLSNNYNYSNYNNYNNNNNY 103


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 8   NITNDYNFVTIFPYNVNNNFLP*IY*L*YI 97
           N  N+YN    +  N NNN+    Y + YI
Sbjct: 329 NYNNNYNNYNNYNNNYNNNYKKLYYNINYI 358


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 484 DNTLQTHNNIIN 519
           DN L +HNN++N
Sbjct: 395 DNALASHNNLLN 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,976
Number of Sequences: 438
Number of extensions: 2432
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)