Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0048
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 107 1e-23
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 106 2e-23
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 77 2e-14
11_04_0056 + 12942802-12942920,12943022-12943115 58 5e-09
04_03_0232 - 13049649-13052807 31 0.84
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 31 0.84
09_04_0127 + 14883661-14884226,14884335-14885235 29 3.4
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 29 4.5
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 7.8
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 107 bits (256), Expect = 1e-23
Identities = 45/83 (54%), Positives = 61/83 (73%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
+G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K + FLR
Sbjct: 5 SGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLR 64
Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
KR N P+ GP HFRAPS+I W+
Sbjct: 65 KRMNTKPSHGPIHFRAPSRIFWR 87
Score = 95.1 bits (226), Expect = 5e-20
Identities = 41/81 (50%), Positives = 52/81 (64%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGMIPHKT RG+ AL L+ +DG PPP+D L+PG YC +G+LS
Sbjct: 89 VRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDALKVLRLQPGHKYCLLGQLSK 148
Query: 437 EIGWKYRDVVRKLEDKRKGKA 499
E+GW Y D +R+LE+KRK KA
Sbjct: 149 EVGWNYHDTIRELEEKRKEKA 169
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 106 bits (254), Expect = 2e-23
Identities = 46/83 (55%), Positives = 61/83 (73%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
+G +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K + FLR
Sbjct: 5 SGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLR 64
Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
KR N P+ GP HFR+P+KILW+
Sbjct: 65 KRMNTKPSHGPIHFRSPAKILWR 87
Score = 97.1 bits (231), Expect = 1e-20
Identities = 42/81 (51%), Positives = 54/81 (66%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGMIPHKT+RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS
Sbjct: 89 VRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSK 148
Query: 437 EIGWKYRDVVRKLEDKRKGKA 499
E+GW Y D +R+LE+KRK KA
Sbjct: 149 EVGWNYYDTIRELEEKRKEKA 169
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 76.6 bits (180), Expect = 2e-14
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGMIPHKT+RG+ AL RL+ Y+ PP+D L+PG YC +G+LS
Sbjct: 23 VRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSK 82
Query: 437 EIGWKYRDVVR 469
E+GW Y D +R
Sbjct: 83 EVGWNYYDTIR 93
Score = 36.7 bits (81), Expect = 0.017
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 195 NVNPARGPFHFRAPSKILWK 254
N P+ GP HFR+P+KILW+
Sbjct: 2 NTKPSHGPIHFRSPAKILWR 21
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +2
Query: 287 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 454
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 497 PCPSSCLQAYEQHHGISIQFHGTVCLH 417
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 416 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLPM-KRNLRGSPRMLVR 556
H G E G +VVR L D +GKAV+RL + R LR P L R
Sbjct: 165 HGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLRHLPEQLGR 212
>09_04_0127 + 14883661-14884226,14884335-14885235
Length = 488
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +2
Query: 494 KAVKRLPMKRNLRGSPRMLVRRCRKRQHHSLPSSNPMDTIRTKKFYKNKPF 646
+AV++L ++++L+ + R +VRR R Q + PSS + + K+ PF
Sbjct: 439 RAVRQL-VQQSLQSNMRRIVRRARLPQDLAPPSSENLKALTASSTSKSLPF 488
>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 549 W*EGVESDNTIHYHHPILWIPLGLRNFTKINPFG 650
W +G++ D + HHP L++P R + K P G
Sbjct: 1055 WWDGLQWDGLENGHHPSLYVPTHSRYYKKKLPRG 1088
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 66 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 176
A A ++ + VVVV CE+ I+G N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,145,731
Number of Sequences: 37544
Number of extensions: 409310
Number of successful extensions: 1085
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -