Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0048
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 133 9e-32
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 133 9e-32
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 30 1.7
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 30 1.7
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 29 2.3
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 3.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 6.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 6.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 6.9
U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical p... 27 9.2
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 133 bits (322), Expect = 9e-32
Identities = 58/82 (70%), Positives = 72/82 (87%)
Frame = +3
Query: 9 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 188
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 189 RCNVNPARGPFHFRAPSKILWK 254
RCN+NPARG FH+RAP KI W+
Sbjct: 62 RCNINPARGAFHYRAPGKIFWR 83
Score = 89.4 bits (212), Expect = 2e-18
Identities = 42/91 (46%), Positives = 54/91 (59%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGM+PHKT RG AL+ LR Y+G P + F L+P R +C VGRLSH
Sbjct: 85 VRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSH 143
Query: 437 EIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
E+GW+++DVV KLE KRK K K+ +
Sbjct: 144 EVGWQFQDVVAKLEAKRKVKGAAYFEQKKKM 174
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 133 bits (322), Expect = 9e-32
Identities = 58/82 (70%), Positives = 72/82 (87%)
Frame = +3
Query: 9 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 188
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 189 RCNVNPARGPFHFRAPSKILWK 254
RCN+NPARG FH+RAP KI W+
Sbjct: 62 RCNINPARGAFHYRAPGKIFWR 83
Score = 89.4 bits (212), Expect = 2e-18
Identities = 42/91 (46%), Positives = 54/91 (59%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGM+PHKT RG AL+ LR Y+G P + F L+P R +C VGRLSH
Sbjct: 85 VRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSH 143
Query: 437 EIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
E+GW+++DVV KLE KRK K K+ +
Sbjct: 144 EVGWQFQDVVAKLEAKRKVKGAAYFEQKKKM 174
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 458 DVVRKLEDKRKGKAVKRLPMKRNLRGSPRMLVRRCRKRQHHS 583
++ R++E++RK K ++L KR G P R +KR+ S
Sbjct: 22 EMARQIENERKEKRAQKLKEKREREGKPPPKKRPAKKRKASS 63
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 458 DVVRKLEDKRKGKAVKRLPMKRNLRGSPRMLVRRCRKRQHHS 583
++ R++E++RK K ++L KR G P R +KR+ S
Sbjct: 22 EMARQIENERKEKRAQKLKEKREREGKPPPKKRPAKKRKASS 63
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 497 PCPSSCLQAYEQHHGISIQFHGTVCLHD 414
PCP E+ HGI++Q G CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 494 CPSSCLQAYEQHHGISIQFHGTVCLHDSNY 405
C S L +E HHGI + G + L D++Y
Sbjct: 329 CSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -2
Query: 461 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 294
HH H H +G V R H E H + E GTHH + H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = -2
Query: 473 AYEQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*E 300
A+ HHG HG H S ++G + H H G+ G HH + S
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594
Query: 299 HSCHA 285
H HA
Sbjct: 595 HGHHA 599
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 476 EDKRKGKAVKRLPMKRNLRGSPRMLVRRCRKRQHHSLPSSNPMDTIR 616
+DKRK +KR+P + R +P R R Q H L S +++
Sbjct: 2160 KDKRKATRIKRVPSAHSARITPITSNLRDRLNQLHQLTVSEDSGSLK 2206
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 476 EDKRKGKAVKRLPMKRNLRGSPRMLVRRCRKRQHHSLPSSNPMDTIR 616
+DKRK +KR+P + R +P R R Q H L S +++
Sbjct: 2160 KDKRKATRIKRVPSAHSARITPITSNLRDRLNQLHQLTVSEDSGSLK 2206
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 476 EDKRKGKAVKRLPMKRNLRGSPRMLVRRCRKRQHHSLPSSNPMDTIR 616
+DKRK +KR+P + R +P R R Q H L S +++
Sbjct: 2160 KDKRKATRIKRVPSAHSARITPITSNLRDRLNQLHQLTVSEDSGSLK 2206
>U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical
protein C50E3.2 protein.
Length = 168
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 472 LTNNITVFPSNFMGQSAYMTVITARFQTE 386
L NNI VFPSN + +++ MT+ R +T+
Sbjct: 27 LENNILVFPSN-ISEASGMTLFHGRIETK 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,901,883
Number of Sequences: 27780
Number of extensions: 338091
Number of successful extensions: 889
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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