Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0048
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   4.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.1  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 658 FWQPKGFIFVKFLSPN 611
           +W  KG ++ + LSPN
Sbjct: 71  WWDYKGIVYFELLSPN 86


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 515 MKRNLRGSPRMLVRRCRKRQHHSLPSSNPMDT 610
           M+ NLRG  +   R   KRQ  S+P+++ + T
Sbjct: 384 MENNLRGETQSNYREMEKRQ--SVPANDLLTT 413


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 154 LKKLPEILICSQRTTTTLFPSRRTL 80
           LK L + L+C ++ +TT+ P+ + +
Sbjct: 68  LKLLSDGLMCVEKVSTTIVPTTQEI 92


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 658 FWQPKGFIFVKFLSPN 611
           +W  KG ++ + L PN
Sbjct: 72  WWDHKGIVYFELLPPN 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,586
Number of Sequences: 438
Number of extensions: 4323
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)