Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0048
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 111 4e-25
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 109 1e-24
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 109 1e-24
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 109 2e-24
At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing, put... 30 1.6
At5g54590.2 68418.m06797 protein kinase family protein contains ... 29 3.7
At4g14200.1 68417.m02191 expressed protein 29 3.7
At5g65687.1 68418.m08267 transporter-related low similarity to s... 28 6.5
At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put... 28 6.5
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put... 28 6.5
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 27 8.6
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 111 bits (267), Expect = 4e-25
Identities = 48/83 (57%), Positives = 61/83 (73%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
+G +K +V+D R H+LGRLA++ AK LL G KVV+VRCE+I +SG R K+K M FLR
Sbjct: 5 SGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLR 64
Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
KR N P+ GP HFRAPSKI W+
Sbjct: 65 KRMNTKPSHGPIHFRAPSKIFWR 87
Score = 85.8 bits (203), Expect = 2e-17
Identities = 38/81 (46%), Positives = 50/81 (61%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGMIPHKT+RG AL RL+ Y+G P P+D L+ G YC +GRLS
Sbjct: 89 VRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSS 148
Query: 437 EIGWKYRDVVRKLEDKRKGKA 499
E+GW + D +++LE KRK +A
Sbjct: 149 EVGWNHYDTIKELETKRKERA 169
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
+G +K +V+D R H+ GRLA++IAK LL G VVVVRCE+I +SG R K+K M FLR
Sbjct: 5 SGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLR 64
Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
KR N P+ GP HFRAPSKI W+
Sbjct: 65 KRMNTKPSHGPIHFRAPSKIFWR 87
Score = 86.6 bits (205), Expect = 1e-17
Identities = 39/91 (42%), Positives = 54/91 (59%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGMIPHKT+RG AL RL+ ++G PPP+D L+ G YC +GRLS
Sbjct: 89 VRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSS 148
Query: 437 EIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
E+GW + D +++LE KRK ++ K+ L
Sbjct: 149 EVGWNHYDTIKELEVKRKERSQALYERKKQL 179
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
+G K +V+D R H+LGRLA+V+AK LL G +VVVRCE+I +SG R K+K M FLR
Sbjct: 5 SGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLR 64
Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
KR N P+ GP HFRAPSKI W+
Sbjct: 65 KRMNTKPSHGPIHFRAPSKIFWR 87
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/91 (43%), Positives = 55/91 (60%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGMIPHKT+RG NAL RL+ ++G P P+D L+ G YC +GRLS
Sbjct: 89 VRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSS 148
Query: 437 EIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
E+GW + D +++LE+KRK +A K+ L
Sbjct: 149 EVGWNHYDTIKELENKRKERAQAVYERKKQL 179
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 109 bits (261), Expect = 2e-24
Identities = 49/83 (59%), Positives = 60/83 (72%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
+G K +V+DGR H+LGRLA+ AK LL G +VVVVRCE+I +SG R K+K M FLR
Sbjct: 5 SGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLR 64
Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
KR N P+ GP HFRAPSKI W+
Sbjct: 65 KRMNTKPSHGPIHFRAPSKIFWR 87
Score = 87.4 bits (207), Expect = 8e-18
Identities = 39/91 (42%), Positives = 54/91 (59%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGMIPHKT+RG AL RL+ ++G PPP+D L+ G YC +GRLS
Sbjct: 89 VRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSS 148
Query: 437 EIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
E+GW + D +++LE KRK ++ K+ L
Sbjct: 149 EVGWNHYDTIKELETKRKERSQVMYERKKQL 179
>At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 657
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 3 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 164
M G++N IDG H+ G A++ + K+ V++ + I++SG R L
Sbjct: 286 MLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGL 339
>At5g54590.2 68418.m06797 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 440
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Frame = +2
Query: 494 KAVKRLPMKR-NLRGSPRML-----VRRCRKRQHHSLPSSNP 601
K + R P KR N+R ++L VR CRKRQ +S PS +P
Sbjct: 357 KCISRAPRKRPNMRDIVQVLTRVIKVRHCRKRQKNS-PSPSP 397
>At4g14200.1 68417.m02191 expressed protein
Length = 784
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 587 PSSNPMDTIRTKKFYKNKPFWLP 655
P+ P+D R +K K +PFW+P
Sbjct: 754 PAKYPVDLKREEKKVKGRPFWVP 776
>At5g65687.1 68418.m08267 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003976, GI:12003972, GI:12003974,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 492
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -3
Query: 304 KSILATLCFVWDHTSYSFHRILDGALKWKGPRAGFTLHLLRRNDI 170
K++ + F+ + Y + + GA + GP+AGF ++ ++ D+
Sbjct: 272 KALFSEKVFIVNVLGYITYNFVIGAYSYWGPKAGFGIYKMKNADM 316
>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 519
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 3 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 164
M G++N IDG H+ G A++ + K V+ + I++SG R L
Sbjct: 361 MLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 732
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 3 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 164
M G++N IDG H+ G A++ + K V+ + I++SG R L
Sbjct: 361 MLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = -3
Query: 250 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEI 134
H LD + W+G + LH LR+ D+S S+ LK+LP++
Sbjct: 662 HSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,170
Number of Sequences: 28952
Number of extensions: 322737
Number of successful extensions: 935
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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