Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0047
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 1.8
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 27 1.8
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 2.3
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 5.4
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 26 5.4
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.2
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.2
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 25 9.5
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 9.5
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 9.5
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 242 RHNYFSAPRRAPVTYTTVKGPMQFFSCIICEVFLTSK 132
R NYF +R P + + G + F C++ + TS+
Sbjct: 486 RENYFKLKKRDPQQFRSASGRLGFMVCLLEILSFTSR 522
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 327 ILSIVRIRLSQSLLDIPAPLITSKST*LLQ 416
ILSI+R + + + IPAP+++++ LLQ
Sbjct: 573 ILSILRKNIGKDISSIPAPVVSNEPCNLLQ 602
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = -1
Query: 382 GAGISSRLWERRIRTILRMNRISKRSMRLKHTLTNNRR 269
G G+ R + +++ I ++ ++ +LKH + N +R
Sbjct: 829 GVGVKQRKTKPKVKKIAGLDPSKRKDSKLKHVIINEKR 866
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 189 QRANAIFLMHNMRSFFDFE-IMNFVH 115
+RA +I HN++S FD E I FV+
Sbjct: 887 ERATSIMTKHNLKSSFDIEAIKEFVN 912
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +3
Query: 279 FVNVCFSLIDLLEIRFILSIVR------IRLSQSLLDIPAPLITSKST*LLQYLKIFFSC 440
F N+ ++D L+ ++ +++ + + +L + P I K L + + F C
Sbjct: 393 FANIYDRVLDFLDFEALIPLLQQFQVKLVFFLKDVLPVLKPKIRKKLLRLFETYNLIFPC 452
Query: 441 RVKYLFSLDFYI 476
++F+L+F +
Sbjct: 453 NQYWVFNLEFLL 464
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 473 YSRDNKIRASNIPYIMPDSN 532
Y +DNKIR S IP +P ++
Sbjct: 142 YLQDNKIRPSKIPKSLPSNS 161
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 480 EITKSAHLIFHTLCQTVIIWG 542
++ K HL+ H++CQT ++G
Sbjct: 307 DLQKQEHLVAHSICQTWNLFG 327
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 420 GTEVIMSIYWLLKAPEYLVDSGKDE 346
G ++ I +L ++P YL+ GKDE
Sbjct: 193 GIITMIGILFLPESPRYLIQVGKDE 217
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 359 LGKTNPNNTENESYF*EIYETKTYINKQ*KAMQAPSNRN 243
+GK N + YF I E+ +IN Q ++A + +N
Sbjct: 472 VGKENNCKNQYPQYFSNIDESNAFINNQCLELEALNRKN 510
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 317 NTIHSQYCSDSSFPESTRYSGAFNNQ*IDIITSVP*NLLQLQS 445
N I S+Y S P+S +Y FN +D P N +L S
Sbjct: 123 NAIESEYELPSIRPKSVKYWSDFNRLFLDTEYLFPVNCSELNS 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,121
Number of Sequences: 5004
Number of extensions: 57867
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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