Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0044
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical...    28   4.6  
Z98866-22|CAE18019.1|  162|Caenorhabditis elegans Hypothetical p...    28   6.0  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    27   8.0  

>AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.3 protein.
          Length = 998

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = -2

Query: 603 HLPTGVLIASFCNVLDRVKVKKLALSRAHT 514
           H+PT + ++S  ++  R+ +K++ALS+ HT
Sbjct: 451 HVPT-ITLSSIPDLPSRISIKQVALSKTHT 479


>Z98866-22|CAE18019.1|  162|Caenorhabditis elegans Hypothetical
           protein Y49E10.27 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 478 LLQHYQTCYNIESMSSA*CEFFNFYAIENVTKTRNKHTC 594
           +L+HY  CY+++ M    C  FN    E+     +  TC
Sbjct: 76  ILKHYGECYHLDCME---CHRFNMVVFEHSVFCGDSRTC 111


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 287 RCISNTGCLLLKITVQNNLTIVYHKCV 207
           +CI N+ C+    T  NN  +VY  CV
Sbjct: 245 QCIDNSVCMNQMCTCNNNYRLVYGYCV 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,941
Number of Sequences: 27780
Number of extensions: 251120
Number of successful extensions: 575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)