Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0042
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24618| Best HMM Match : 7tm_1 (HMM E-Value=0.017)                   27   9.2  
SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)                       27   9.2  

>SB_24618| Best HMM Match : 7tm_1 (HMM E-Value=0.017)
          Length = 192

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 19  FYLVMGTIFYLIS*LIAFINAFNICLYQ*HSVCTKFIISKSKK 147
           FYL+    F+  S ++ F++ F IC++   SV T   +S  K+
Sbjct: 48  FYLISRFYFFFASTVLTFLSLFLICVF---SVVTLSAVSHQKR 87


>SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)
          Length = 869

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 242 ISVTRRLH-GLLLFVNVCFSLIDLLEIRFILSIVRIRLSQSLLDI 373
           +S+ R L   LLL +N+  S+  LL I  +LSI R+     LL I
Sbjct: 510 LSINRLLTINLLLSINLLLSINRLLSINLLLSINRLLSINRLLSI 554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,645,284
Number of Sequences: 59808
Number of extensions: 351745
Number of successful extensions: 660
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)