BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0036 (602 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g14690.1 68414.m01756 microtubule associated protein (MAP65/A... 30 1.0 At5g40645.1 68418.m04934 nitrate-responsive NOI protein, putativ... 29 1.8 At1g60070.1 68414.m06767 gamma-adaptin, putative similar to gamm... 29 3.1 At5g55220.1 68418.m06883 trigger factor type chaperone family pr... 28 5.5 At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 27 7.2 At3g05725.1 68416.m00641 expressed protein 27 7.2 At1g74160.1 68414.m08589 expressed protein 27 7.2 At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 fami... 27 9.6 At3g50430.1 68416.m05516 expressed protein 27 9.6 At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa... 27 9.6 At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containi... 27 9.6 At2g25410.1 68415.m03043 hypothetical protein 27 9.6 At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 27 9.6 >At1g14690.1 68414.m01756 microtubule associated protein (MAP65/ASE1) family protein low similarity to SP|P32380 NUF1 protein (Spindle poly body spacer protein SPC110) {Saccharomyces cerevisiae}, smooth muscle myosin heavy chain [Homo sapiens] GI:4417214; contains Pfam profile PF03999: Microtubule associated protein (MAP65/ASE1 family) Length = 707 Score = 30.3 bits (65), Expect = 1.0 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = -3 Query: 255 ELKGNKLQEAAQQQQYNRAVEDIELWLSEVEGQLLSEDYGKDLTSVQNL 109 EL NK++E A ++ ++ I+ WLS E + E+Y +D +Q+L Sbjct: 386 ELHINKIKEEAHSRK--EIIDRIDRWLSACEEENWLEEYNQDQKKMQDL 432 >At5g40645.1 68418.m04934 nitrate-responsive NOI protein, putative similar to nitrate-induced NOI protein [Zea mays] GI:2642213 Length = 73 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -3 Query: 405 RTGAAGQQASRRRDNGRRQASA*ARTFC 322 +T A+G+ AS+RRDN + Q + FC Sbjct: 44 KTNASGRAASQRRDNNKSQDEPTKKRFC 71 >At1g60070.1 68414.m06767 gamma-adaptin, putative similar to gamma-adaptin GI:2765190 from [Homo sapiens]; contains Pfam profiles PF01602: Adaptin N terminal region, PF02883: Adaptin C-terminal domain Length = 867 Score = 28.7 bits (61), Expect = 3.1 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -1 Query: 425 VQKHQNFEQELQANKPRVDEITAVGKR 345 +QKHQN L P +DE T G+R Sbjct: 581 IQKHQNIRSSLVERMPVLDEATFSGRR 607 >At5g55220.1 68418.m06883 trigger factor type chaperone family protein contains Pfam profiles PF05697: Bacterial trigger factor protein (TF), PF05698: Bacterial trigger factor protein (TF) C-terminus, PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type Length = 547 Score = 27.9 bits (59), Expect = 5.5 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = -1 Query: 491 KRES*KFATDDSYLDPTNLNGKVQKH-QNFEQELQANKPRVDEITAVGKRLLELEHFAQP 315 KRE+ +F+TD+ + N + +KH Q F++E K +V EI K L L+ A+ Sbjct: 485 KRENLEFSTDELVKEVENSISEFKKHKQEFDEE--RVKDQVQEILEGAKVLEWLKDRAEI 542 Query: 314 QISSR 300 Q +R Sbjct: 543 QYITR 547 >At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle Length = 457 Score = 27.5 bits (58), Expect = 7.2 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +2 Query: 302 ETIFEVEQNVRAQADA-CRRPLSRRREACWPAAPVRSSDVSAPCHSGWSD 448 E+ E ++ QA + CRR S++R A P+A + ++ G SD Sbjct: 369 ESSIEDQKTTTTQAKSKCRRSRSKKRSASLPSASIGPLEIQKGVKEGKSD 418 >At3g05725.1 68416.m00641 expressed protein Length = 69 Score = 27.5 bits (58), Expect = 7.2 Identities = 14/46 (30%), Positives = 19/46 (41%) Frame = +2 Query: 389 PAAPVRSSDVSAPCHSGWSDPSTSRRWRTFSFLVYPTFSFITIAFR 526 P P RSS S W+DP R+ R + +Y + I R Sbjct: 7 PVRPRRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLR 52 >At1g74160.1 68414.m08589 expressed protein Length = 1030 Score = 27.5 bits (58), Expect = 7.2 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 256 EDCTSRSHIPPSSSTRDDI*G*AKCSSSSRRLPTAVISSTRGL 384 E T S + P SS + CSSSS++ P +V++ GL Sbjct: 249 ERATRNSSVDPKSSKLSESFS-ESCSSSSKKRPPSVVAKLMGL 290 >At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 family protein low similarity to alpha-1,2-galactosyltransferase, Schizosaccharomyces pombe [SP|Q09174] Length = 432 Score = 27.1 bits (57), Expect = 9.6 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%) Frame = -2 Query: 349 SVCLSSNILLN----LKYRLAWKSWAEYGSDWCSLRAEGKQVAGSGSTTAVQPGRRG 191 +VCLS + + L W ++ + + SLR +GK V SG P G Sbjct: 12 AVCLSDGVFFLAGAFMSLTLVWSYFSIFSPSFTSLRHDGKPVQCSGLDMQFDPSEPG 68 >At3g50430.1 68416.m05516 expressed protein Length = 642 Score = 27.1 bits (57), Expect = 9.6 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +2 Query: 242 FPFSSKTAPVAPIFRPALPRETIFEVEQNVRAQADA 349 FPF T +P R LP + EVEQN R A A Sbjct: 563 FPFEGSTDAPSPKRRKVLPETS--EVEQNWRLHAQA 596 >At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 878 Score = 27.1 bits (57), Expect = 9.6 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 11/88 (12%) Frame = -3 Query: 294 RAGRNMGATGAVFELK--GNKLQEAAQQQQYNRAVEDIELWLSEV----EGQL-----LS 148 RA R+ A GA F + GNKL + +++ R ++D+E L E+ G+L L Sbjct: 270 RAERDATA-GAFFPVLSLGNKLATSDRERDKQRDLQDMETVLKELTVLASGRLQQLKNLH 328 Query: 147 EDYGKDLTSVQNLQKKHALLEADVSSHA 64 E+ K L + NLQ K + SS A Sbjct: 329 EERTKMLGKMSNLQNKSKSVRCISSSQA 356 >At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containing protein Length = 972 Score = 27.1 bits (57), Expect = 9.6 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Frame = -1 Query: 431 GKVQKHQNFEQELQANK---PRVDEITAVGKRLLELEHFAQPQIS 306 G+++ H N ++ K RV+++ A G+R + L+ QPQ++ Sbjct: 928 GRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQSLTQPQMA 972 >At2g25410.1 68415.m03043 hypothetical protein Length = 377 Score = 27.1 bits (57), Expect = 9.6 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 449 PSTSRRWRTFSFLVYPTFSFITIAFRTVDTL 541 P + R R ++FL+ P + IT +FR +D L Sbjct: 114 PFSFLRSRNYTFLICPKEANITASFRAIDCL 144 >At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:499047) [Arabidopsis thaliana] Length = 1730 Score = 27.1 bits (57), Expect = 9.6 Identities = 18/63 (28%), Positives = 32/63 (50%) Frame = -3 Query: 240 KLQEAAQQQQYNRAVEDIELWLSEVEGQLLSEDYGKDLTSVQNLQKKHALLEADVSSHAE 61 KLQ Q+ ++ + D++ L ++ QL E+ K L +L ++ L+ VSS Sbjct: 958 KLQLRDTQETKSKEISDLQSALQDM--QLEIEELSKGLEMTNDLAAENEQLKESVSSLQN 1015 Query: 60 RID 52 +ID Sbjct: 1016 KID 1018 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,495,917 Number of Sequences: 28952 Number of extensions: 241792 Number of successful extensions: 916 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 891 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 916 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1197101088 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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