Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0035
(392 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 100 2e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 55 3e-09
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 46 2e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 40 1e-04
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 39 3e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 35 0.004
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 31 0.048
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 30 0.11
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.59
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 2.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 2.4
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.2
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 5.5
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 5.5
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 24 9.7
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 24 9.7
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 24 9.7
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 24 9.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 99.5 bits (237), Expect = 2e-22
Identities = 42/47 (89%), Positives = 44/47 (93%)
Frame = +1
Query: 250 GKPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIATNWDDM 390
G+PRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI NWDDM
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDM 82
Score = 72.9 bits (171), Expect = 2e-14
Identities = 32/37 (86%), Positives = 35/37 (94%)
Frame = +2
Query: 149 DEEVAALVVDNGSGMCKAGFAGYDAPRAVFPSIVGSP 259
+EE+AALV+DNGSGMCKAGFAG DAPRAVFPSIVG P
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 55.2 bits (127), Expect = 3e-09
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +1
Query: 250 GKPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIATNWDDM 390
G+ +H+ VM QKD +VG EAQ+ RG+L ++ PIE GI NW DM
Sbjct: 40 GRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDM 86
Score = 43.2 bits (97), Expect = 1e-05
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 167 LVVDNGSGMCKAGFAGYDAPRAVFPSIVG 253
+ +DNGSG KAGFAG D P+ +FP+ VG
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVG 40
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 46.0 bits (104), Expect = 2e-06
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +2
Query: 155 EVAALVVDNGSGMCKAGFAGYDAPRAVFPSIVGSPAIRA 271
E A +V+DNG+G K G+A + PR FPSIVG P +RA
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRA 40
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/33 (48%), Positives = 26/33 (78%)
Frame = +1
Query: 292 KDSYVGDEAQSKRGILTLKYPIEHGIATNWDDM 390
KD VGDEA++ R +L +KYP+E+GI ++++M
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEM 82
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 39.9 bits (89), Expect = 1e-04
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +2
Query: 167 LVVDNGSGMCKAGFAGYDAPRAVFPSIVGS 256
+++DNG+G K G+AG DAP VFP+++ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT 37
Score = 32.3 bits (70), Expect = 0.028
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 295 DSYVGDEAQSKRGI-LTLKYPIEHGIATNWDDM 390
D ++G++A K +L YPI HG NWD M
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHM 105
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 38.7 bits (86), Expect = 3e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 152 EEVAALVVDNGSGMCKAGFAGYDAPRAVFPSIVG 253
+EV+A+V+D GS + GF+G D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 35.1 bits (77), Expect = 0.004
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 152 EEVAALVVDNGSGMCKAGFAGYDAPRAVFPSIVG 253
EE+ +LV+D GS + G+AG ++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 31.5 bits (68), Expect = 0.048
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 167 LVVDNGSGMCKAGFAGYDAPRAVFPSIV 250
LV+DNGS +AG+ G P+ VF ++V
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLV 54
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.11
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 292 SVPYRPSRPDGGASHDRGKHCARSIISCEAGLAHT 188
SVPY PS+P+GGA G H R +++ L T
Sbjct: 87 SVPY-PSKPNGGAYQGIGFHYGRFVMNLRKALTST 120
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.9 bits (59), Expect = 0.59
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 319 VPHLLHKSPSVPYRPSRPDGGAS 251
+ L+ K+PS PY SRP AS
Sbjct: 306 IDQLISKAPSYPYSSSRPSASAS 328
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 2.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 194 TYRSHCLLPTRQLLRRTS*ISEI 126
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 2.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 348 FEGQDTSFALCLISYIRVLLSHTDHHA 268
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 271 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 357
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 167 LVVDNGSGMCKAGFAG 214
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 239 PSIVGSPAIRA*WSVWDRRTL 301
P+++ + A WSVWD R+L
Sbjct: 350 PNLLATGADNGVWSVWDLRSL 370
>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 422
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 228 RGASYPAKPALHIPEPLSTTNAATSSS 148
R S+P P ++IP+P T + + S
Sbjct: 359 RRRSHPTNPTVNIPQPAQTVPSNDNGS 385
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 23.8 bits (49), Expect = 9.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 145 VRRRSCRVGSRQWLRYVQGRLRRI*CSSRSVSLDR 249
VRR++ +GS +R+V G R S+R+ SL +
Sbjct: 1100 VRRKNVNIGSSNSIRHVSGSTSR---STRTRSLSK 1131
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 23.8 bits (49), Expect = 9.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 303 IRVLLSHTDHHALMAGLPTIEGNTARGASY 214
+ + LS D + +PTI N G+SY
Sbjct: 98 LSIFLSALDQTVITTAIPTIVANLDGGSSY 127
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 391 PCHPS*WRFRVRWGI*GSGYLFC 323
P HP W + RW I ++FC
Sbjct: 69 PAHPQNWHWAKRWSI---VFMFC 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,814
Number of Sequences: 5004
Number of extensions: 35216
Number of successful extensions: 101
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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