Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0035
(392 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 4e-23
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 4e-23
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 4e-23
SB_56| Best HMM Match : Actin (HMM E-Value=0) 103 4e-23
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 103 4e-23
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 4e-23
SB_54| Best HMM Match : Actin (HMM E-Value=0) 48 3e-06
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 46 8e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 44 4e-05
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 34 0.047
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.19
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 32 0.19
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_18636| Best HMM Match : GPS (HMM E-Value=8.4) 30 0.58
SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5) 29 1.0
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_5505| Best HMM Match : ResIII (HMM E-Value=0.55) 28 3.1
SB_50421| Best HMM Match : CUB (HMM E-Value=0) 27 5.4
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_51284| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 27 7.2
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 27 7.2
SB_51157| Best HMM Match : Pkinase (HMM E-Value=0.00029) 26 9.5
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_56014| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08) 26 9.5
SB_44353| Best HMM Match : GRP (HMM E-Value=4.9) 26 9.5
SB_37572| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_19172| Best HMM Match : GRP (HMM E-Value=4.9) 26 9.5
SB_2796| Best HMM Match : RR_TM4-6 (HMM E-Value=1.9) 26 9.5
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 103 bits (248), Expect = 4e-23
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = +1
Query: 250 GKPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIATNWDDM 390
G+PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI TNWDDM
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 82
Score = 72.5 bits (170), Expect = 1e-13
Identities = 32/37 (86%), Positives = 35/37 (94%)
Frame = +2
Query: 149 DEEVAALVVDNGSGMCKAGFAGYDAPRAVFPSIVGSP 259
D++VAALV+DNGSGMCKAGFAG DAPRAVFPSIVG P
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 103 bits (248), Expect = 4e-23
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = +1
Query: 250 GKPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIATNWDDM 390
G+PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI TNWDDM
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83
Score = 74.1 bits (174), Expect = 4e-14
Identities = 34/39 (87%), Positives = 36/39 (92%)
Frame = +2
Query: 143 MCDEEVAALVVDNGSGMCKAGFAGYDAPRAVFPSIVGSP 259
M D+E+AALVVDNGSGMCKAGFAG DAPRAVFPSIVG P
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 103 bits (248), Expect = 4e-23
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = +1
Query: 250 GKPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIATNWDDM 390
G+PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI TNWDDM
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 82
Score = 71.3 bits (167), Expect = 3e-13
Identities = 32/37 (86%), Positives = 35/37 (94%)
Frame = +2
Query: 149 DEEVAALVVDNGSGMCKAGFAGYDAPRAVFPSIVGSP 259
+++VAALVVDNGSGMCKAGFAG DAPRAVFPSIVG P
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 103 bits (248), Expect = 4e-23
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = +1
Query: 250 GKPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIATNWDDM 390
G+PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI TNWDDM
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 82
Score = 72.5 bits (170), Expect = 1e-13
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +2
Query: 149 DEEVAALVVDNGSGMCKAGFAGYDAPRAVFPSIVGSP 259
++EVAALVVDNGSGMCKAGFAG DAPRAVFPSIVG P
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 103 bits (248), Expect = 4e-23
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = +1
Query: 250 GKPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIATNWDDM 390
G+PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI TNWDDM
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83
Score = 78.6 bits (185), Expect = 2e-15
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +2
Query: 143 MCDEEVAALVVDNGSGMCKAGFAGYDAPRAVFPSIVGSP 259
MCD++VAALVVDNGSGMCKAGFAG DAPRAVFPSIVG P
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 103 bits (248), Expect = 4e-23
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = +1
Query: 250 GKPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIATNWDDM 390
G+PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI TNWDDM
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83
Score = 74.1 bits (174), Expect = 4e-14
Identities = 32/39 (82%), Positives = 36/39 (92%)
Frame = +2
Query: 143 MCDEEVAALVVDNGSGMCKAGFAGYDAPRAVFPSIVGSP 259
M D+++AALV+DNGSGMCKAGFAG DAPRAVFPSIVG P
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +2
Query: 167 LVVDNGSGMCKAGFAGYDAPRAVFPSIVGSP 259
+V+DNGSG CKAG + ++PR VFP+IVG P
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRP 2127
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 46.4 bits (105), Expect = 8e-06
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = +2
Query: 152 EEVAALVVDNGSGMCKAGFAGYDAPRAVFPSIVGSP 259
E LV+D GS M K GFAG DAP+ VFP IVG P
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRP 1389
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 45.6 bits (103), Expect = 1e-05
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +2
Query: 161 AALVVDNGSGMCKAGFAGYDAPRAVFPSIVGSPAIRA*WSVWD 289
+ +V DNG+G K G+AG + P +FPS+VG P IR+ V D
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGD 49
Score = 44.0 bits (99), Expect = 4e-05
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +1
Query: 292 KDSYVGDEAQSKRGILTLKYPIEHGIATNWDDM 390
KD VGDEA R +L + YP+++GI NWDDM
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDM 85
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 44.0 bits (99), Expect = 4e-05
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +2
Query: 137 FKMCDEEVAALVVDNGSGMCKAGFAGYDAPRAVFPSIVGSP 259
FK+ A+V+DNG G+ K GFAG PR + P++VG+P
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNP 733
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 33.9 bits (74), Expect = 0.047
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 280 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIATNWDDM 390
G+ D ++GDEA K T K+PI H I +WD M
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLM 313
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 32.7 bits (71), Expect = 0.11
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -2
Query: 256 ASHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 149
++ D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 4 SADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 240 GNTARGASYPAKPALHIPEPLSTT 169
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 240 GNTARGASYPAKPALHIPEPLSTT 169
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.7 bits (66), Expect = 0.44
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 240 GNTARGASYPAKPALHIPEPLSTT 169
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_18636| Best HMM Match : GPS (HMM E-Value=8.4)
Length = 513
Score = 30.3 bits (65), Expect = 0.58
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 145 HLELVKLVRCRCDKMKIKRPAVTANREKQIPDCRPGAGTPAPG 17
HL+ + +C K+KIK+ N + ++P C P P PG
Sbjct: 185 HLQRISAEQC---KLKIKQHFTPENVKVRLPKCEPSIWDPIPG 224
>SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)
Length = 554
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 198 RPASQDMMLLAQCFPRSWEAPPSGRDGRYGTEGLLCR 308
+P +DM C PR W P R+GR T L CR
Sbjct: 263 KPKCRDMNCDV-CAPRQWLEPTEKREGREVTNKLRCR 298
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = -2
Query: 241 GKHCARSIISCEAGLAHTGAIVYYQRGNFFVAHLELVKLVRCRCD 107
G+HC + I C G GA GN+ E C D
Sbjct: 724 GRHCEKDIDECSLGYCKNGATCTNTPGNYSCQCTEFTNGTNCELD 768
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 240 GNTARGASYPAKPALHIPEPLSTT 169
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 240 GNTARGASYPAKPALHIPEPLSTT 169
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_5505| Best HMM Match : ResIII (HMM E-Value=0.55)
Length = 1346
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -3
Query: 351 VFEGQDTSFALCLISYIRVLLSHTDHHALMAGLPTIEGNTARGASYPAKPALHIPEPLST 172
V EG D FA C++SY+ LL + H + GLP G + K A H P T
Sbjct: 238 VREGGDV-FANCVVSYVARLLRNRGHSRSL-GLPKTRGKIFE--RFDKKLATHGVHPKKT 293
Query: 171 T 169
+
Sbjct: 294 S 294
>SB_50421| Best HMM Match : CUB (HMM E-Value=0)
Length = 270
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 3 PAGRIPGAGVPAPGRQSGICFSRLAVTAGRLI---FILSHLHLTNFTNSR 143
P+G G P+P C R++VT G I F + HL T+F +
Sbjct: 49 PSGAFTSPGYPSPYPLGRHCEWRISVTPGERIVLNFTVFHLKKTSFNKCK 98
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 195 ARPASQDMMLLAQCFPRSWEAPPSGRDGRYGTEGL 299
AR QD + A C R+++ SGR+ GT+G+
Sbjct: 6603 ARSTPQDSV--AACDARNYDGKESGRESTEGTDGI 6635
>SB_51284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -3
Query: 381 PVSGDSVFDGVFEGQDTSFALCLISYIRVLLSHT 280
P GDS D VF + F C+ I + HT
Sbjct: 174 PTRGDSYLDNVFTNRPDLFGECIPYNISIKTDHT 207
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 205 AGLAHTGAIVYYQRGNFFVAHLELVKLVRC 116
+G +T A VY+QRGN + H + V + C
Sbjct: 358 SGRGNTWA-VYFQRGNTWTVHFQRVNTMGC 386
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 155 EVAALVVDNGSGMCKAGFAGYDAPRAV 235
++A LV+D G+ K GFA APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_51157| Best HMM Match : Pkinase (HMM E-Value=0.00029)
Length = 161
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 137 FKMCDEEVAALVVDNGSGMCKAGFAGYDAPRAVFP 241
FK+CD ++ +VD+ + AG Y AP + P
Sbjct: 15 FKLCDFGISGQLVDSLAKTVDAGCKPYMAPERINP 49
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 255 LPTIEGNTARGASYPAKPALHIPEPLSTTNAATSSSH 145
L IE + A+ P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1181
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = -2
Query: 304 HKSPSVPYRPSRPDGGASHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFVAHLELVKL 125
++S +P R S+ G HD ++ I+ AGL YY+ + + +L+K
Sbjct: 326 NQSVVIPRRSSKKMEGL-HDMNQYLNTEIVCTLAGLGCAEGTEYYKSPDCLESLKDLIKF 384
Query: 124 VRCRCDKMKIKR 89
+R +I+R
Sbjct: 385 LRRDDSTCEIRR 396
>SB_56014| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
Length = 300
Score = 26.2 bits (55), Expect = 9.5
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 72 LAVTAGRLIFILSHLHLTNF-TNSRCATKKLPRW**TMAPVC-ARPASQDMMLL 227
LAV+A R+I + HL T+ TN+R + W T+ C + AS +ML+
Sbjct: 117 LAVSADRVIALYLHLRYTSIVTNNRVVKLHIIIWTVTVPFTCLSLLASHSVMLI 170
>SB_44353| Best HMM Match : GRP (HMM E-Value=4.9)
Length = 361
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 115 RCDKMKIKRPAVTANREKQIPDCRPGAG 32
R K K KRP T KQ P C G G
Sbjct: 128 RVRKRKRKRPTATTTTTKQGPVCGRGGG 155
>SB_37572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 137 FKMCDEEVAALVVDNGSGMCKAGFAGYDAPRAVFP 241
FK+CD ++ +VD+ + AG Y AP + P
Sbjct: 168 FKLCDFGISGQLVDSLAKTVDAGCKPYMAPERINP 202
>SB_19172| Best HMM Match : GRP (HMM E-Value=4.9)
Length = 278
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 115 RCDKMKIKRPAVTANREKQIPDCRPGAG 32
R K K KRP T KQ P C G G
Sbjct: 45 RVRKRKRKRPTATTTTTKQGPVCGRGGG 72
>SB_2796| Best HMM Match : RR_TM4-6 (HMM E-Value=1.9)
Length = 224
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 115 RCDKMKIKRPAVTANREKQIPDCRPGAG 32
R K K KRP T KQ P C G G
Sbjct: 128 RVRKRKRKRPTATTTTTKQGPVCGRGGG 155
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,009,616
Number of Sequences: 59808
Number of extensions: 324658
Number of successful extensions: 811
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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