Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0031
         (558 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022561-1|AAH22561.1|  396|Homo sapiens DENN/MADD domain contai...    31   3.6  
AK097908-1|BAC05195.1|  213|Homo sapiens protein ( Homo sapiens ...    29   8.4  

>BC022561-1|AAH22561.1|  396|Homo sapiens DENN/MADD domain
           containing 1B protein.
          Length = 396

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 95  QEIFSWNVVDWNYPDQFSKQQALRTGALIPENALPVGIER 214
           Q +FS  VV W +P+ F  Q+ L++   +P+   P  +ER
Sbjct: 13  QPVFSNPVVLWKFPEDFGDQEILQS---VPKFCFPFDVER 49


>AK097908-1|BAC05195.1|  213|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40589 fis, clone THYMU2009596. ).
          Length = 213

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 387 GQSRPGV-IGLWVLDVWHLWIRQRYKCVPRTRSMY 488
           G S+P + +GLWV ++W    R  YKC+P  R+ +
Sbjct: 53  GCSQPLLKVGLWV-EMWAASGRHSYKCIPALRTTF 86


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,290,517
Number of Sequences: 237096
Number of extensions: 1936485
Number of successful extensions: 3828
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3828
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)