BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0025 (588 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g27080.2 68415.m03254 harpin-induced protein-related / HIN1-r... 30 1.3 At2g27080.1 68415.m03253 harpin-induced protein-related / HIN1-r... 30 1.3 At3g06150.1 68416.m00707 expressed protein 29 2.3 At3g47330.1 68416.m05144 hypothetical protein contains Pfam prof... 29 3.0 At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein si... 29 3.0 At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat... 28 4.0 At5g44415.1 68418.m05439 hypothetical protein contains Pfam prof... 28 5.3 At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein / ... 28 5.3 At5g40670.1 68418.m04937 PQ-loop repeat family protein / transme... 27 7.0 At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 27 7.0 At3g25180.1 68416.m03144 cytochrome P450 family protein similar ... 27 9.3 At3g24870.1 68416.m03119 expressed protein 27 9.3 At2g29310.1 68415.m03560 tropinone reductase, putative / tropine... 27 9.3 At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein ... 27 9.3 >At2g27080.2 68415.m03254 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related contains 1 transmembrane domain; similar to hin1 homolog (GI:13122296) [Arabidopsis thaliana]; similar to hin1 (GI:22830759) [Nicotiana tabacum] Length = 260 Score = 29.9 bits (64), Expect = 1.3 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Frame = -2 Query: 335 HRGRAWSR--TNRKYSLCCICTF*IRHYSSAVGLLVVLQIQSSSAIFLLVRFFKVKRFPD 162 HR SR TNR CC C+F +AV +L+VL S + ++L+ R P Sbjct: 56 HRFEQLSRKKTNRSNCRCCFCSF-----LAAVFILIVLAGISFAVLYLIYR----PEAPK 106 Query: 161 CSIVVHTVNDIKINA 117 SI +V+ I +N+ Sbjct: 107 YSIEGFSVSGINLNS 121 >At2g27080.1 68415.m03253 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related contains 1 transmembrane domain; similar to hin1 homolog (GI:13122296) [Arabidopsis thaliana]; similar to hin1 (GI:22830759) [Nicotiana tabacum] Length = 260 Score = 29.9 bits (64), Expect = 1.3 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Frame = -2 Query: 335 HRGRAWSR--TNRKYSLCCICTF*IRHYSSAVGLLVVLQIQSSSAIFLLVRFFKVKRFPD 162 HR SR TNR CC C+F +AV +L+VL S + ++L+ R P Sbjct: 56 HRFEQLSRKKTNRSNCRCCFCSF-----LAAVFILIVLAGISFAVLYLIYR----PEAPK 106 Query: 161 CSIVVHTVNDIKINA 117 SI +V+ I +N+ Sbjct: 107 YSIEGFSVSGINLNS 121 >At3g06150.1 68416.m00707 expressed protein Length = 594 Score = 29.1 bits (62), Expect = 2.3 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%) Frame = +3 Query: 300 FPVRSTPSASTMVSSQPLIMAEGTASPNVTL--TPQDLIYKK 419 + VR +PS S +S++P +++E N+TL P++L+ KK Sbjct: 62 YSVRISPSPSPFMSTKPNLVSEKPHRQNLTLMMAPRNLVPKK 103 >At3g47330.1 68416.m05144 hypothetical protein contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287 Length = 664 Score = 28.7 bits (61), Expect = 3.0 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = +1 Query: 460 DRITDRTVTSDAEKIIVLLRQQTLQQYLVRECEFKAFNIRY 582 D++TD+ D+E + +R Q +++Y+ + E +A RY Sbjct: 522 DKLTDKLAVMDSEIKRICVRVQGIEEYVADQLEKEAEKARY 562 >At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein similar to beta-hexosaminidase precursor SP:P43077 from [Candida albicans] Length = 580 Score = 28.7 bits (61), Expect = 3.0 Identities = 13/59 (22%), Positives = 27/59 (45%) Frame = +3 Query: 231 YYQKSDCRRIMPNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDL 407 YY D R + + + + S ++ S+P + A+G+ P++ TP+D+ Sbjct: 184 YYGVDDIMRTIKAMSANKLNVFHWHITDSQSFPLVLPSEPSLAAKGSLGPDMVYTPEDV 242 >At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative similar to mitogen-activated protein kinase [Arabidopsis thaliana] gi|1255448|dbj|BAA09057; contains Pfam PF00069: Protein kinase domain Length = 773 Score = 28.3 bits (60), Expect = 4.0 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +2 Query: 269 FRRYKCNTSCISGSFYSKRVHDGLQPAFNNGRGHSVTKC 385 +RRY+ S IS Y+K++ DGL+ + G H KC Sbjct: 591 YRRYQIRDSLIS--LYTKQILDGLKYLHHKGFIHRDIKC 627 >At5g44415.1 68418.m05439 hypothetical protein contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287 Length = 611 Score = 27.9 bits (59), Expect = 5.3 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = +1 Query: 460 DRITDRTVTSDAEKIIVLLRQQTLQQYLVRECEFKAFNIRY 582 D++TD+ D+E + LR Q +++Y+ + E +A +Y Sbjct: 467 DKLTDKLAVMDSEIKRICLRVQGIEEYVADQLEKEAEKDKY 507 >At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein similar to GB:AAD27896 to endoxylanases gi|1255238 (Thermoanaerobacterium thermosulfurigenes), gi|1813595 (Hordeum vulgare) and others ; contains Pfam profiles PF00331: Glycosyl hydrolase family 10, PF02018: Carbohydrate binding domain Length = 1063 Score = 27.9 bits (59), Expect = 5.3 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +2 Query: 248 LQKNNAEFRRYKCNTSCISGSFYSKRV 328 L + N +FR Y N + GSFY R+ Sbjct: 825 LTRYNGKFRHYDVNNEMLHGSFYRDRL 851 >At5g40670.1 68418.m04937 PQ-loop repeat family protein / transmembrane family protein similar to SP|O60931 Cystinosin {Homo sapiens}; contains Pfam profile PF04193: PQ loop repeat Length = 270 Score = 27.5 bits (58), Expect = 7.0 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = -1 Query: 549 SHQILLKCL--LPQQNNNFLCIGRHCTVGYSVGNLAL 445 S Q+ + C+ +PQ NF R TVG+S+GN+ L Sbjct: 157 SIQVFMTCVKYIPQAKMNFT---RKSTVGWSIGNILL 190 >At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM domain-containing protein contains Pfam profiles PF00168: C2 domain; contains PF02893: GRAM domain; similar to Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus] Length = 1859 Score = 27.5 bits (58), Expect = 7.0 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = +3 Query: 114 VRVYFDVVYRVHNN*--TIWKPFNFEEADEKKNCRR-RLDLEYYQKSDCRRIMPNSEGTN 284 VRV +V+ N T+W P N ++ KK+C L + + QK+ + + + T+ Sbjct: 908 VRVSVSLVFDAENQSLGTVWYPLNPKKKGSKKDCGEILLKICFSQKNSVLDLTSSGDQTS 967 Query: 285 ATQA 296 A+++ Sbjct: 968 ASRS 971 >At3g25180.1 68416.m03144 cytochrome P450 family protein similar to cytochrome P450 monooxygenase GB:AAC49188 [Pisum sativum]; contains Pfam profile: PF00067 cytochrome P450 Length = 515 Score = 27.1 bits (57), Expect = 9.3 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 4/96 (4%) Frame = +3 Query: 135 VYRVHNN*TIW---KPFNFEEADEKKNCRRRLDLEYYQKSDCRRIMPNSE-GTNATQAVF 302 ++++H + IW K F E E K+ + + EY RR P G V Sbjct: 407 IWKLHRDPKIWPDPKTFKPERFMEDKSQCEKSNFEYIPFGSGRRSCPGVNLGLRVVHFVL 466 Query: 303 PVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLI 410 VS +PL MAEG + P +++ Sbjct: 467 ARLLQGFELHKVSDEPLDMAEGPGLALPKINPVEVV 502 >At3g24870.1 68416.m03119 expressed protein Length = 1841 Score = 27.1 bits (57), Expect = 9.3 Identities = 18/73 (24%), Positives = 30/73 (41%) Frame = +3 Query: 210 RRRLDLEYYQKSDCRRIMPNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVT 389 +R L + Q +MP+ + + +++P VS QPL M + SPN+ Sbjct: 1409 QRYLQQQQQQFPASGSMMPHVQQPQGSSVSSSSQNSPQTQPPVSPQPLSMPPVSPSPNIN 1468 Query: 390 LTPQDLIYKKCLS 428 Q K L+ Sbjct: 1469 AMAQQKPQKSQLA 1481 >At2g29310.1 68415.m03560 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase SP:P50165 from [Datura stramonium] Length = 262 Score = 27.1 bits (57), Expect = 9.3 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +2 Query: 200 EKLQKTIGSGVLPKVRLQKNNAEFRRYKCNTSCISGSFYSKRVHDGLQPAFN 355 EKL +T+ S K+ + NN R K T ++ F S + L+PAF+ Sbjct: 74 EKLMQTVSSLFDGKLNILVNNVGVIRGKPTTEYVAEDF-SYHISTNLEPAFH 124 >At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein contains Prosite PS00028: Zinc finger, C2H2 type, domain; similar to S-locus protein 4 (GI:6069478) [Brassica rapa]; similar to Pre-mRNA cleavage complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens] Length = 416 Score = 27.1 bits (57), Expect = 9.3 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = +3 Query: 285 ATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCLSELETLVMPDYRQ 464 A+ + F +R+ S +T +P + G +PN + P L Y+K L +PD+ Sbjct: 92 ASNSSFALRNNDS-NTNNYQKPFVAGYG--NPNPQIVPLPLPYRKLDDNLSLDSLPDWVP 148 Query: 465 NNR 473 N+R Sbjct: 149 NSR 151 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,205,916 Number of Sequences: 28952 Number of extensions: 257047 Number of successful extensions: 717 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 710 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 717 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1161268208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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