Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0021
(393 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0989 + 7672764-7672904,7673017-7673067,7673176-7673296,767... 45 3e-05
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020... 41 3e-04
02_05_0684 - 30880527-30880753,30881952-30882124,30882687-308827... 39 0.001
03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140... 33 0.062
01_06_1395 + 37010446-37010895 32 0.14
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 31 0.33
08_02_1409 - 26864544-26864658,26864787-26864916,26864953-268652... 31 0.44
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 31 0.44
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 29 1.8
01_04_0054 - 15456668-15459691 27 4.1
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325... 27 5.4
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646... 27 7.1
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 27 7.1
10_07_0001 + 11698408-11698785,11698883-11699809 27 7.1
08_02_1379 - 26540012-26540587,26540804-26540995,26541777-265418... 27 7.1
06_02_0050 - 10951725-10951910,10951988-10952021,10952521-109527... 27 7.1
03_05_1070 + 30125131-30127029 27 7.1
07_01_0968 - 8111340-8112067,8112496-8112566,8112663-8112837,811... 26 9.4
02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152... 26 9.4
>06_01_0989 +
7672764-7672904,7673017-7673067,7673176-7673296,
7673406-7673510,7673963-7674024,7674398-7674515,
7674596-7674932,7675389-7675536,7675632-7675733,
7675824-7675943,7676436-7676519,7676622-7676749,
7677351-7677435,7677566-7677713,7677971-7678047,
7678187-7678243,7678423-7678561,7678642-7678796,
7679003-7679116,7679208-7679275,7679830-7679996,
7680245-7680453
Length = 911
Score = 44.8 bits (101), Expect = 3e-05
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVLDSIKHQLRYYDAMEDSHCKGFIDLAEVIAVTQATPAPGPP 74
G+L K+ A GW +RWFVL+ +L Y E+ H +G I L E + PP
Sbjct: 584 GYLLKKSAKTNGWSRRWFVLNEKSGKLGYTKKQEERHFRGVITLEE--CNLEEVEEEEPP 641
Query: 73 KKCDD 59
K D
Sbjct: 642 KSLKD 646
>08_02_0721 +
20401217-20401360,20401689-20401809,20401969-20402067,
20402790-20402851,20403680-20403797,20404004-20404343,
20404435-20404582,20405043-20405144,20405240-20405359,
20405812-20405895,20405974-20406101,20408314-20408389,
20408556-20408631,20408800-20408876,20408975-20409031,
20409411-20409555,20409634-20409806,20409928-20410054,
20410090-20410192,20410492-20410688,20410946-20411097
Length = 882
Score = 41.1 bits (92), Expect = 3e-04
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVLDSIKHQLRYYDAMEDSHCKGFIDLAE 116
G L+K+ A W RWFVL+ +L Y E+ H +G I+L E
Sbjct: 540 GFLFKKRAKANDWSNRWFVLNERSGKLGYTKKQEERHFRGVINLEE 585
>02_05_0684 -
30880527-30880753,30881952-30882124,30882687-30882754,
30882860-30882973,30883281-30883438,30883516-30883654,
30883851-30883907,30884064-30884140,30884324-30884462,
30884590-30884668,30885047-30885174,30885269-30885352,
30886072-30886191,30886274-30886375,30886470-30886617,
30887404-30887749,30887851-30887968,30888309-30888370,
30888798-30888947,30889049-30889169,30889269-30889319,
30889427-30889567
Length = 933
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVLDSIKHQLRYYDAMEDSHCKGFIDLAE 116
G+L K+ A W +RWFVL+ +L Y E+ H +G I L E
Sbjct: 597 GYLLKKSAKNNEWSKRWFVLNEKSGKLGYTKKQEERHFRGVIVLEE 642
>03_05_0599 -
26012956-26013316,26013444-26013736,26013813-26014040,
26014666-26014897,26015392-26015475,26015562-26015623,
26016263-26016367,26016458-26016481
Length = 462
Score = 33.5 bits (73), Expect = 0.062
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 256 RGHLYKRGALLKGWKQRWFVLDSIKHQLRYYDAMEDSHCKGFI 128
+G L KR L+ W +RW +LD ++ Y ++ KG I
Sbjct: 34 QGPLLKRSETLRKWNERWVILDPTSGKMEYKIRRNETAIKGTI 76
>01_06_1395 + 37010446-37010895
Length = 149
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 283 VERRREQNARGHLYKRGALLKGWKQRWFVL 194
VE R G L K+G +K W++RWFVL
Sbjct: 16 VEFWRSPERAGWLTKQGEYIKTWRRRWFVL 45
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 31.1 bits (67), Expect = 0.33
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -3
Query: 256 RGHLYKRGALLKGWKQRWFVLDS 188
+G+L+KR + WK+R+FVLDS
Sbjct: 186 QGYLFKRSENSREWKRRFFVLDS 208
>08_02_1409 -
26864544-26864658,26864787-26864916,26864953-26865283,
26866507-26866626,26867489-26867821,26867915-26868001,
26868093-26868320,26868434-26868565,26868649-26868861,
26869376-26869417,26869829-26869894,26870230-26870274,
26870367-26870429,26870757-26870827,26871149-26871249,
26871458-26871534,26872415-26872459
Length = 732
Score = 30.7 bits (66), Expect = 0.44
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -3
Query: 256 RGHLYKRGALLKG-WKQRWFVLDSIKHQLRYY 164
+G+L KR + L+ WK+R+FVLDS + L YY
Sbjct: 247 QGYLSKRSSNLRADWKRRFFVLDS-RGMLYYY 277
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 30.7 bits (66), Expect = 0.44
Identities = 24/82 (29%), Positives = 36/82 (43%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVLDSIKHQLRYYDAMEDSHCKGFIDLAEVIAVTQATPAPGPP 74
G L K+G +K W++RWFVL Q R + + + +G + VI V G
Sbjct: 42 GWLNKQGEYIKTWRRRWFVL----KQGRLFWFKDAAVTRGSVPRG-VIPVATCLTVKGAE 96
Query: 73 KKCDDRSFFDLRTSRRTYNFCA 8
+ + F+L T T F A
Sbjct: 97 DVINRQFAFELSTPTDTMYFIA 118
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 220 GWKQRWFVLDSIKHQLRYYDAMEDSHCKG 134
GWK RWF D RY +S KG
Sbjct: 802 GWKPRWFAKDKATDTYRYLGGYWESREKG 830
>01_04_0054 - 15456668-15459691
Length = 1007
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 232 ALLKGWKQRWFVLDSIKHQLRYYDAME 152
AL KGW +W D+ KH+ Y+A+E
Sbjct: 612 ALYKGWSMQW-SSDADKHRAYEYEAVE 637
>10_08_0877 +
21230447-21230815,21231855-21232208,21232417-21232504,
21232844-21233268,21233477-21233632,21233849-21234016,
21234170-21234310,21234393-21234629,21234710-21234823,
21235096-21235272
Length = 742
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVL 194
G LYK + KGW+ RWF +
Sbjct: 52 GVLYKWTNIGKGWRPRWFAI 71
>12_01_1055 -
10861665-10861829,10862827-10863171,10864374-10864682,
10864813-10864968,10865669-10866117,10869275-10869359,
10869944-10870300,10870672-10871076
Length = 756
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -3
Query: 223 KGWKQRWFVL---DSIKHQLRYYDAMEDSHCKGFIDL 122
KGW+ RWF DS ++ Y++A E + G D+
Sbjct: 709 KGWQPRWFSKDDDDSYRYIGGYWEAREKGNWDGIPDI 745
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVLD 191
G L+K KGW+ RWFVL+
Sbjct: 58 GVLHKWVNYGKGWRLRWFVLE 78
>12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 199 VLDSIKHQLRYYDAMEDSHCKGFIDLAEVIAVTQATPAPGPP 74
VLD+I + ++D+M+ ++ LA+ + P GPP
Sbjct: 948 VLDNITGRFVHHDSMDGANLPAATRLADALRPLLPAPPQGPP 989
>10_07_0001 + 11698408-11698785,11698883-11699809
Length = 434
Score = 26.6 bits (56), Expect = 7.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 157 MEDSHCKGFIDLAEVIAVTQATPAPGPP 74
+++ + + F+D EV A + TP PP
Sbjct: 331 VDEQYIQSFVDFGEVAAGDELTPTAAPP 358
>08_02_1379 -
26540012-26540587,26540804-26540995,26541777-26541812,
26542255-26542488
Length = 345
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 139 YSASLPSHRSIVADVLSSPTRTIFVSIP*VERLACRDALV 258
YS+S P SIV +S V+IP V RL D LV
Sbjct: 38 YSSSCPKLESIVRYEVSRKINETVVTIPAVLRLFFHDCLV 77
>06_02_0050 -
10951725-10951910,10951988-10952021,10952521-10952772,
10953093-10954114
Length = 497
Score = 26.6 bits (56), Expect = 7.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 205 WFVLDSIKHQLRYYDAMEDSHCKGFIDLAEVIAVTQATP--APG 80
+F D +++Y DA + GF+DL + I TQ T APG
Sbjct: 332 YFATDDCPEKMQYMDAKKKKEPIGFLDLTQ-ICQTQHTVRLAPG 374
>03_05_1070 + 30125131-30127029
Length = 632
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -3
Query: 220 GWKQRWFVLDSIKHQLRYYDAMEDSHCKGFIDLAEVIAVTQATPAP 83
G + + +D ++ +R++ A E+ H + + A+T+ PAP
Sbjct: 317 GATETLYDVDCVERVVRHFLAEEEDHGEAEASTSAAAAITEEAPAP 362
>07_01_0968 -
8111340-8112067,8112496-8112566,8112663-8112837,
8112991-8113054,8113351-8113671,8114413-8114438,
8114495-8114573
Length = 487
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -3
Query: 196 LDSIKHQLRYYDAMEDSHCKGFIDLAEVIAVTQATPAPGPPKKCDDRSFFDLRTSRRTYN 17
L ++ + D S +GF + Q P+PGP + C D + + + +++ Y
Sbjct: 410 LSNVSLSSKSADPWNCSLIEGFSNSVAPEICEQLRPSPGPGQVCYDGNSYPVPAAQQPYK 469
Query: 16 FCASR 2
A+R
Sbjct: 470 SGATR 474
>02_04_0532 +
23711530-23711755,23712984-23713093,23713204-23715298,
23716092-23716153,23716236-23716277,23716614-23716673,
23716873-23717010,23717333-23717374,23717452-23717574
Length = 965
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 232 ALLKGWKQRWFVLDSIKHQLRYYDAMED 149
A+L G K++ +LDS++ + YYD +D
Sbjct: 880 AVLNGAKEKIQILDSMRMEKSYYDKDKD 907
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,966,279
Number of Sequences: 37544
Number of extensions: 166359
Number of successful extensions: 623
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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