Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0021
(393 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical... 40 5e-04
At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) s... 40 6e-04
At2g30880.2 68415.m03764 pleckstrin homology (PH) domain-contain... 35 0.023
At2g30880.1 68415.m03763 pleckstrin homology (PH) domain-contain... 35 0.023
At5g05710.1 68418.m00628 pleckstrin homology (PH) domain-contain... 34 0.040
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing... 33 0.091
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 32 0.12
At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative / i... 30 0.49
At2g29700.1 68415.m03610 pleckstrin homology (PH) domain-contain... 30 0.64
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 30 0.64
At4g22540.1 68417.m03253 oxysterol-binding family protein simila... 28 2.0
At1g77730.1 68414.m09050 pleckstrin homology (PH) domain-contain... 28 2.0
At4g12460.1 68417.m01971 oxysterol-binding family protein simila... 28 2.6
At2g31020.1 68415.m03782 oxysterol-binding family protein simila... 28 2.6
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 27 6.0
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 27 6.0
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 27 6.0
At4g00315.1 68417.m00040 F-box family protein contains F-box dom... 26 7.9
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 26 7.9
>At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical to
dynamin-like protein 6 (ADL6) [Arabidopsis thaliana]
GI:6651399; contains Pfam profiles PF01031: Dynamin
central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain, PF00169: PH domain
Length = 914
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVLDSIKHQLRYYDAMEDSHCKGFIDLAE 116
G+L K+ A GW +RWFVL+ +L Y E+ + +G I L E
Sbjct: 577 GYLMKKSAKTNGWSRRWFVLNEKTGKLGYTKKQEERNFRGTITLEE 622
>At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3)
strong similarity to dynamin-like protein 6 (ADL6)
[Arabidopsis thaliana] GI:6651399; contains Pfam
profiles PF01031: Dynamin central region, PF00350:
Dynamin family, PF02212: Dynamin GTPase effector domain,
PF00169: PH domain; identical to cDNA dynamin-like
protein ADL3, GI:4803835
Length = 920
Score = 39.9 bits (89), Expect = 6e-04
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVLDSIKHQLRYYDAMEDSHCKGFIDLAE 116
G+L K+ A GW +RWFVL+ +L Y E+ + +G + L E
Sbjct: 584 GYLMKKSAKTNGWSRRWFVLNEKTGKLGYTKKQEERNFRGTVTLEE 629
>At2g30880.2 68415.m03764 pleckstrin homology (PH) domain-containing
protein contains Pfam profile PF00169: PH domain
Length = 381
Score = 34.7 bits (76), Expect = 0.023
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 256 RGHLYKRGALLKGWKQRWFVLDSIKHQLRYYDAMEDSHCKGFI 128
+G L+KR L+ W +RW +LD ++ Y + KG I
Sbjct: 35 QGPLFKRSETLRKWNERWVILDPTTGKMEYKTRRNEPTIKGTI 77
>At2g30880.1 68415.m03763 pleckstrin homology (PH) domain-containing
protein contains Pfam profile PF00169: PH domain
Length = 504
Score = 34.7 bits (76), Expect = 0.023
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 256 RGHLYKRGALLKGWKQRWFVLDSIKHQLRYYDAMEDSHCKGFI 128
+G L+KR L+ W +RW +LD ++ Y + KG I
Sbjct: 35 QGPLFKRSETLRKWNERWVILDPTTGKMEYKTRRNEPTIKGTI 77
>At5g05710.1 68418.m00628 pleckstrin homology (PH) domain-containing
protein similar to AtPH1 [Arabidopsis thaliana]
GI:5926716; contains Pfam profile PF00169: PH domain
Length = 144
Score = 33.9 bits (74), Expect = 0.040
Identities = 25/82 (30%), Positives = 37/82 (45%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVLDSIKHQLRYYDAMEDSHCKGFIDLAEVIAVTQATPAPGPP 74
G L K+G +K W++RWFVL K L ++ +DS V+ V A G
Sbjct: 32 GWLTKQGEYIKTWRRRWFVLKQGK--LFWF---KDSDVTRVSRPRGVVPVESCLTAKGAE 86
Query: 73 KKCDDRSFFDLRTSRRTYNFCA 8
+ ++ F+L T T F A
Sbjct: 87 DVLNKQNAFELSTRNETMYFIA 108
>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 850
Score = 32.7 bits (71), Expect = 0.091
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = -3
Query: 256 RGHLYKRGALLKG-WKQRWFVLDSIKHQLRYY 164
+G+L KR + L+G WK+R+F+LDS + L YY
Sbjct: 314 QGYLSKRSSNLRGDWKRRFFILDS-RGMLYYY 344
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 32.3 bits (70), Expect = 0.12
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -3
Query: 271 REQNARGHLYKRGALLKG-WKQRWFVLDSIKHQLRYY 164
+E +G+L KR A L+ WK+R+FVLD+ H YY
Sbjct: 289 KEVTKQGYLLKRSASLRADWKRRFFVLDN--HGSLYY 323
>At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative /
isoleucine--tRNA ligase, putative similar to SP|P41252
Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)
(Isoleucine--tRNA ligase) (IleRS) (IRS) {Homo sapiens};
contains Pfam profile PF00133: tRNA synthetases class I
(I, L, M and V)
Length = 1190
Score = 30.3 bits (65), Expect = 0.49
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 133 ILYSASLPSHRSIVADVLSSPTRTIFVSIP*VERLACRDALVRSVL 270
+L S+ +PSH I+AD +P T S+ V +L+ + +L R L
Sbjct: 1068 LLLSSLMPSHAVIIADETFTPKETSDESVKKVPKLSYKISLARPAL 1113
>At2g29700.1 68415.m03610 pleckstrin homology (PH) domain-containing
protein (PH1) identical to AtPH1 [Arabidopsis thaliana]
GI:5926716; contains Pfam profile PF00169: PH domain
Length = 145
Score = 29.9 bits (64), Expect = 0.64
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVL 194
G L K+G +K W++RWFVL
Sbjct: 31 GWLTKQGDYIKTWRRRWFVL 50
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 29.9 bits (64), Expect = 0.64
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -3
Query: 271 REQNARGHLYKRGALLK-GWKQRWFVLDSIKHQLRYY 164
+E +G+L KR + L+ WK+++FVLDS H YY
Sbjct: 287 KEVIKQGYLLKRSSSLRTDWKRKFFVLDS--HGSMYY 321
>At4g22540.1 68417.m03253 oxysterol-binding family protein similar
to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
cuniculus}; contains Pfam profiles PF00169: PH domain,
PF01237: Oxysterol-binding protein
Length = 721
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 265 QNARGHLYKRGALLKGWKQRWFVL 194
+ G LYK KGW+ RWF+L
Sbjct: 51 ETVAGILYKWTNFGKGWRSRWFLL 74
>At1g77730.1 68414.m09050 pleckstrin homology (PH) domain-containing
protein similar to SP|P16258 Oxysterol-binding protein 1
{Oryctolagus cuniculus}; contains Pfam profile PF00169:
PH domain
Length = 265
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVL 194
G LYK +GWK+RWFVL
Sbjct: 56 GILYKWVNYGQGWKRRWFVL 75
>At4g12460.1 68417.m01971 oxysterol-binding family protein similar
to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 694
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 265 QNARGHLYKRGALLKGWKQRWFVL 194
++ G LYK KGW+ RWF+L
Sbjct: 26 RSVAGILYKWTNYGKGWRSRWFLL 49
>At2g31020.1 68415.m03782 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 760
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVL 194
G LYK KGW+ RWFVL
Sbjct: 75 GILYKWVNYGKGWRPRWFVL 94
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVL 194
G LYK +GW+ RWFVL
Sbjct: 108 GILYKWVNYGRGWRPRWFVL 127
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Frame = -3
Query: 223 KGWKQRWFV----LDSIKHQLRYYDAMED 149
+GWK RWF+ +S +++ Y++A ED
Sbjct: 764 RGWKPRWFMKEKGSESYRYKGGYWEARED 792
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVL 194
G LYK +GW+ RWFVL
Sbjct: 108 GILYKWVNYGRGWRPRWFVL 127
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Frame = -3
Query: 223 KGWKQRWFV----LDSIKHQLRYYDAMED 149
+GWK RWF+ +S +++ Y++A ED
Sbjct: 764 RGWKPRWFMKEKGSESYRYKGGYWEARED 792
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 253 GHLYKRGALLKGWKQRWFVL 194
G LYK +GW+ RWFVL
Sbjct: 108 GILYKWVNYGRGWRPRWFVL 127
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Frame = -3
Query: 223 KGWKQRWFV----LDSIKHQLRYYDAMED 149
+GWK RWF+ +S +++ Y++A ED
Sbjct: 765 RGWKPRWFMKEKGSESYRYKGGYWEARED 793
>At4g00315.1 68417.m00040 F-box family protein contains F-box domain
Pfam:PF00646
Length = 441
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 217 WKQRWFVLDSIKHQLRYYDAMEDSHCKGFIDLA 119
WK W L +++ R+Y E FI L+
Sbjct: 34 WKSLWMWLPKLEYDFRHYSVSEGQGLARFITLS 66
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 187 IKHQLRYYDAMEDSHCKGFIDLAEVIAVTQATPAP 83
I RYY M + H K F DL + + ++ +P
Sbjct: 255 INQVFRYYREMSEGHLKTFRDLLRFMLIIKSHASP 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,038,089
Number of Sequences: 28952
Number of extensions: 126347
Number of successful extensions: 378
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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