BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0017 (477 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC084154-3|AAK29869.1| 323|Caenorhabditis elegans Hypothetical ... 29 1.3 Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical pr... 27 9.2 AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear recep... 27 9.2 AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical... 27 9.2 >AC084154-3|AAK29869.1| 323|Caenorhabditis elegans Hypothetical protein Y22D7AR.6 protein. Length = 323 Score = 29.5 bits (63), Expect = 1.3 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 400 VLFLCASTPRH*DQKTISKMAAVAANCLLSESA 302 +L L T +H DQ T+SK+A + A C + SA Sbjct: 132 ILDLKLGTRQHGDQATVSKIACMTAKCQATTSA 164 >Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical protein W05B5.3a protein. Length = 514 Score = 26.6 bits (56), Expect = 9.2 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 218 CYRVKI*IVSANTECRCQVCRVK*TLKYGRFRE 316 C R + ++ N RCQ CR+K L G R+ Sbjct: 150 CTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRD 182 >AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear receptor NHR-85 protein. Length = 514 Score = 26.6 bits (56), Expect = 9.2 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 218 CYRVKI*IVSANTECRCQVCRVK*TLKYGRFRE 316 C R + ++ N RCQ CR+K L G R+ Sbjct: 150 CTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRD 182 >AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical protein W05B5.3a protein. Length = 514 Score = 26.6 bits (56), Expect = 9.2 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 218 CYRVKI*IVSANTECRCQVCRVK*TLKYGRFRE 316 C R + ++ N RCQ CR+K L G R+ Sbjct: 150 CTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRD 182 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,477,500 Number of Sequences: 27780 Number of extensions: 201866 Number of successful extensions: 458 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 456 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 458 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 871571276 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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