Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0016
(532 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY119495-1|AAM50149.1| 432|Drosophila melanogaster GH10162p pro... 38 0.011
AE013599-3106|AAF46655.1| 432|Drosophila melanogaster CG3295-PA... 38 0.011
AF160938-1|AAD46878.1| 845|Drosophila melanogaster BcDNA.LD1876... 35 0.079
AE014134-1943|AAF53002.1| 845|Drosophila melanogaster CG6743-PA... 35 0.079
EF057988-1|ABL84923.1| 845|Drosophila melanogaster Nup107 protein. 33 0.18
EF057987-1|ABL84922.1| 845|Drosophila melanogaster Nup107 protein. 33 0.18
EF057986-1|ABL84921.1| 845|Drosophila melanogaster Nup107 protein. 33 0.18
EF057985-1|ABL84920.1| 845|Drosophila melanogaster Nup107 protein. 33 0.18
EF057984-1|ABL84919.1| 845|Drosophila melanogaster Nup107 protein. 33 0.18
EF057983-1|ABL84918.1| 845|Drosophila melanogaster Nup107 protein. 33 0.18
EF057982-1|ABL84917.1| 845|Drosophila melanogaster Nup107 protein. 33 0.18
EF057981-1|ABL84916.1| 845|Drosophila melanogaster Nup107 protein. 33 0.18
EF057979-1|ABL84914.1| 846|Drosophila melanogaster Nup107 protein. 33 0.18
EF057978-1|ABL84913.1| 845|Drosophila melanogaster Nup107 protein. 33 0.18
EF057977-1|ABL84912.1| 845|Drosophila melanogaster Nup107 protein. 33 0.18
EF057980-1|ABL84915.1| 845|Drosophila melanogaster Nup107 protein. 31 0.74
BT023819-1|AAZ86740.1| 741|Drosophila melanogaster SD06601p pro... 29 5.2
AJ606680-1|CAE54809.1| 741|Drosophila melanogaster lamin B rece... 29 5.2
AY060601-1|AAL28149.1| 470|Drosophila melanogaster GH01839p pro... 28 6.9
AE013599-570|AAF59148.2| 470|Drosophila melanogaster CG14762-PA... 28 6.9
>AY119495-1|AAM50149.1| 432|Drosophila melanogaster GH10162p
protein.
Length = 432
Score = 37.5 bits (83), Expect = 0.011
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 301 PNTP--LTPEQAQVVSELASTIKQNAFQLSTDHRELHATVSKSGQVYR*AFRGPIMQQLL 474
P P LT Q + V + + +LST+HR+LH ++SK G+ F +
Sbjct: 81 PTAPQRLTERQVESVRNALARCHERVQKLSTEHRDLHGSISKIGKAIDRNFSADFSSTM- 139
Query: 475 QRREMFCSDENHLLWNKPL 531
R ++ +EN +L NK +
Sbjct: 140 -RVDVLQDEENLMLLNKAI 157
>AE013599-3106|AAF46655.1| 432|Drosophila melanogaster CG3295-PA
protein.
Length = 432
Score = 37.5 bits (83), Expect = 0.011
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 301 PNTP--LTPEQAQVVSELASTIKQNAFQLSTDHRELHATVSKSGQVYR*AFRGPIMQQLL 474
P P LT Q + V + + +LST+HR+LH ++SK G+ F +
Sbjct: 81 PTAPQRLTERQVESVRNALARCHERVQKLSTEHRDLHGSISKIGKAIDRNFSADFSSTM- 139
Query: 475 QRREMFCSDENHLLWNKPL 531
R ++ +EN +L NK +
Sbjct: 140 -RVDVLQDEENLMLLNKAI 157
>AF160938-1|AAD46878.1| 845|Drosophila melanogaster BcDNA.LD18761
protein.
Length = 845
Score = 34.7 bits (76), Expect = 0.079
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QLS DHR L
Sbjct: 708 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLSWDHRLL 764
>AE014134-1943|AAF53002.1| 845|Drosophila melanogaster CG6743-PA
protein.
Length = 845
Score = 34.7 bits (76), Expect = 0.079
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QLS DHR L
Sbjct: 708 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLSWDHRLL 764
>EF057988-1|ABL84923.1| 845|Drosophila melanogaster Nup107 protein.
Length = 845
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QL+ DHR L
Sbjct: 708 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLNWDHRLL 764
>EF057987-1|ABL84922.1| 845|Drosophila melanogaster Nup107 protein.
Length = 845
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QL+ DHR L
Sbjct: 708 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLNWDHRLL 764
>EF057986-1|ABL84921.1| 845|Drosophila melanogaster Nup107 protein.
Length = 845
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QL+ DHR L
Sbjct: 708 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLNWDHRLL 764
>EF057985-1|ABL84920.1| 845|Drosophila melanogaster Nup107 protein.
Length = 845
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QL+ DHR L
Sbjct: 708 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLNWDHRLL 764
>EF057984-1|ABL84919.1| 845|Drosophila melanogaster Nup107 protein.
Length = 845
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QL+ DHR L
Sbjct: 708 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLNWDHRLL 764
>EF057983-1|ABL84918.1| 845|Drosophila melanogaster Nup107 protein.
Length = 845
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QL+ DHR L
Sbjct: 708 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLNWDHRLL 764
>EF057982-1|ABL84917.1| 845|Drosophila melanogaster Nup107 protein.
Length = 845
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QL+ DHR L
Sbjct: 708 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLNWDHRLL 764
>EF057981-1|ABL84916.1| 845|Drosophila melanogaster Nup107 protein.
Length = 845
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QL+ DHR L
Sbjct: 708 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLNWDHRLL 764
>EF057979-1|ABL84914.1| 846|Drosophila melanogaster Nup107 protein.
Length = 846
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QL+ DHR L
Sbjct: 709 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLNWDHRLL 765
>EF057978-1|ABL84913.1| 845|Drosophila melanogaster Nup107 protein.
Length = 845
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QL+ DHR L
Sbjct: 708 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLNWDHRLL 764
>EF057977-1|ABL84912.1| 845|Drosophila melanogaster Nup107 protein.
Length = 845
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV+E ++ + N + P++ +V + + +NA QL+ DHR L
Sbjct: 708 HRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLNWDHRLL 764
>EF057980-1|ABL84915.1| 845|Drosophila melanogaster Nup107 protein.
Length = 845
Score = 31.5 bits (68), Expect = 0.74
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 232 YR*SIARYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHREL 402
+R + R+ +KV E + + N + P++ +V + + +NA QL+ DHR L
Sbjct: 708 HRSEVVRWEHKVXEQXXQTIELLYNVLMFPDKGWLVDPFIAKLPENAVQLNWDHRLL 764
>BT023819-1|AAZ86740.1| 741|Drosophila melanogaster SD06601p
protein.
Length = 741
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 312 WCIWWLLGYFPPQLLYFVNISCNTSSVCSFKFVNFVIAL 196
W +LL P +Y++ SC + C FK +N I L
Sbjct: 311 WLGAFLLLLLLPTAVYYLTWSCTARNACQFKHLNLGILL 349
>AJ606680-1|CAE54809.1| 741|Drosophila melanogaster lamin B
receptor protein.
Length = 741
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 312 WCIWWLLGYFPPQLLYFVNISCNTSSVCSFKFVNFVIAL 196
W +LL P +Y++ SC + C FK +N I L
Sbjct: 311 WLGAFLLLLLLPTAVYYLTWSCTARNACQFKHLNLGILL 349
>AY060601-1|AAL28149.1| 470|Drosophila melanogaster GH01839p
protein.
Length = 470
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 286 IAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHRELHATVSKS 423
+ Q PP T + PEQ++ ++ T+K+N + + +L A ++KS
Sbjct: 29 LGQGPPQTQVCPEQSE-IAPCICTVKKNGLDILCETTDL-AHITKS 72
>AE013599-570|AAF59148.2| 470|Drosophila melanogaster CG14762-PA
protein.
Length = 470
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 286 IAQQPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHRELHATVSKS 423
+ Q PP T + PEQ++ ++ T+K+N + + +L A ++KS
Sbjct: 29 LGQGPPQTQVCPEQSE-IAPCICTVKKNGLDILCETTDL-AHITKS 72
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,377,691
Number of Sequences: 53049
Number of extensions: 502516
Number of successful extensions: 1163
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1991467008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -