BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0008 (564 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z93379-7|CAD54132.1| 188|Caenorhabditis elegans Hypothetical pr... 29 3.1 U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr... 29 3.1 AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine... 28 5.3 AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical ... 28 5.3 AL032630-1|CAA21558.1| 366|Caenorhabditis elegans Hypothetical ... 28 5.3 AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholin... 28 5.3 Z82276-4|CAB05241.3| 327|Caenorhabditis elegans Hypothetical pr... 27 7.0 AF026209-5|AAB71279.2| 344|Caenorhabditis elegans Serpentine re... 27 9.3 >Z93379-7|CAD54132.1| 188|Caenorhabditis elegans Hypothetical protein F21H7.12 protein. Length = 188 Score = 28.7 bits (61), Expect = 3.1 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Frame = -1 Query: 132 KVFHS-YCCNFIKKTCIFYF--VSCFIYIFSVV 43 ++ HS Y C+ I +F F V+C +Y+FS+V Sbjct: 130 RLIHSDYQCSIIVPISVFVFSIVTCIVYLFSIV 162 >U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein ZC53.4 protein. Length = 1410 Score = 28.7 bits (61), Expect = 3.1 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 244 RYIIKYNKI*YTHFTLYMNYNNSYGYINC 330 +Y +N+ T+F LY++ NN YG+ C Sbjct: 1191 KYTKNFNEKQLTNFLLYLDANNLYGWAMC 1219 >AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine receptor (62.5 kD)(acr-23) protein. Length = 545 Score = 27.9 bits (59), Expect = 5.3 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 117 YCCNFIKKTCIFYFVSCFIYIFSVV*FTSVCNYSN 13 Y N I T + F+S + SV FT+ CN S+ Sbjct: 245 YVLNLIAPTAVITFISIIGFFTSVNPFTNFCNVSS 279 >AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical protein Y75B8A.3 protein. Length = 827 Score = 27.9 bits (59), Expect = 5.3 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +1 Query: 274 YTHFTLYMNYNNSYGY 321 YT+ T Y N NN+YGY Sbjct: 584 YTNVTQYSNVNNNYGY 599 >AL032630-1|CAA21558.1| 366|Caenorhabditis elegans Hypothetical protein Y62H9A.1 protein. Length = 366 Score = 27.9 bits (59), Expect = 5.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 49 RKNIYKTRHKIKYACFFYEIATITMKD 129 R N+YKT ++IKY Y IA + + D Sbjct: 175 RDNLYKTDNRIKYFFNEYSIAIVRVSD 201 >AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholine receptor protein 23 protein. Length = 545 Score = 27.9 bits (59), Expect = 5.3 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 117 YCCNFIKKTCIFYFVSCFIYIFSVV*FTSVCNYSN 13 Y N I T + F+S + SV FT+ CN S+ Sbjct: 245 YVLNLIAPTAVITFISIIGFFTSVNPFTNFCNVSS 279 >Z82276-4|CAB05241.3| 327|Caenorhabditis elegans Hypothetical protein K03D3.4 protein. Length = 327 Score = 27.5 bits (58), Expect = 7.0 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -3 Query: 313 NCYYSSYKA*NV-YIIFCYILLCTGTSGLTIFGRLIV 206 N +Y A N+ Y++F +LCT GL I+ LI+ Sbjct: 64 NHFYKCVVAMNIGYVLFGIFVLCTLAEGLLIYISLII 100 >AF026209-5|AAB71279.2| 344|Caenorhabditis elegans Serpentine receptor, class j protein25 protein. Length = 344 Score = 27.1 bits (57), Expect = 9.3 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -1 Query: 180 LSRFPTFNPFHLYFILKVFHSYCCNFIK 97 +S FP F+P + F + F + C NF K Sbjct: 288 VSTFPFFDPTAIIFFIPSFRAKCINFGK 315 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,895,095 Number of Sequences: 27780 Number of extensions: 272246 Number of successful extensions: 718 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 679 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 718 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1166125180 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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