Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0008
(564 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 25 0.53
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 23 1.6
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 3.7
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 3.7
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 22 4.9
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 21 6.5
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 8.6
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 21 8.6
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 21 8.6
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 8.6
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 8.6
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 21 8.6
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 8.6
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 8.6
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 25.0 bits (52), Expect = 0.53
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 283 FTLYMNYNNSYGYINCYN 336
++ Y NYNN+Y N YN
Sbjct: 324 YSNYNNYNNNYNNYNNYN 341
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 23.4 bits (48), Expect = 1.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -1
Query: 96 KTCIFYFVSCFIYIFSVV*FTSVCNYS 16
K Y V CF+++F+ + + NY+
Sbjct: 302 KAIDIYLVMCFVFVFAALLEYAAVNYT 328
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.2 bits (45), Expect = 3.7
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +2
Query: 137 IKYKWNGLNVGNRLKRSLEMSISHYQSTENR*ARRSGT 250
+ +W +G+R++R ++ S + Q+ E + R T
Sbjct: 1631 VALRWRSRYLGDRMQRPMKESQENQQNAETQRERYYAT 1668
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.2 bits (45), Expect = 3.7
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +2
Query: 137 IKYKWNGLNVGNRLKRSLEMSISHYQSTENR*ARRSGT 250
+ +W +G+R++R ++ S + Q+ E + R T
Sbjct: 1627 VALRWRSRYLGDRMQRPMKESQENQQNAETQRERYYAT 1664
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 4.9
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +1
Query: 262 NKI*YTHFTLYMNYNNSYGYIN 327
NK + + NYNN Y Y N
Sbjct: 87 NKTIHNNNNYKYNYNNKYNYNN 108
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.4 bits (43), Expect = 6.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 280 HFTLYMNYNNSYGYIN 327
+++ Y NYNN+Y N
Sbjct: 90 NYSNYNNYNNNYNNYN 105
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.0 bits (42), Expect = 8.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 156 PFHLYFILKVFHSYCCNFIKKTCIFYFVS 70
PF + +LKV+ Y TC F F++
Sbjct: 184 PFTVLPLLKVWGRYTTEGFLTTCSFDFLT 212
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 298 NYNNSYGYINCYNPHD 345
NYNN+Y N YN H+
Sbjct: 93 NYNNNY---NNYNKHN 105
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 298 NYNNSYGYINCYNPHD 345
NYNN+Y N YN H+
Sbjct: 93 NYNNNY---NNYNKHN 105
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 298 NYNNSYGYINCYNPHD 345
NYNN+Y N YN H+
Sbjct: 93 NYNNNY---NNYNKHN 105
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 298 NYNNSYGYINCYNPHD 345
NYNN+Y N YN H+
Sbjct: 93 NYNNNY---NNYNKHN 105
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 298 NYNNSYGYINCYNPHD 345
NYNN+Y N YN H+
Sbjct: 93 NYNNNY---NNYNKHN 105
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 298 NYNNSYGYINCYNPHD 345
NYNN+Y N YN H+
Sbjct: 93 NYNNNY---NNYNKHN 105
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 298 NYNNSYGYINCYNPHD 345
NYNN+Y N YN H+
Sbjct: 93 NYNNNY---NNYNKHN 105
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 298 NYNNSYGYINCYNPHD 345
NYNN+Y N YN H+
Sbjct: 93 NYNNNY---NNYNKHN 105
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 298 NYNNSYGYINCYNPHD 345
NYNN+Y N YN H+
Sbjct: 93 NYNNNY---NNYNKHN 105
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 298 NYNNSYGYINCYNPHD 345
NYNN+Y N YN H+
Sbjct: 326 NYNNNY---NNYNKHN 338
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 298 NYNNSYGYINCYNPHD 345
NYNN+Y N YN H+
Sbjct: 326 NYNNNY---NNYNKHN 338
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 21.0 bits (42), Expect = 8.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +1
Query: 304 NNSYGYINCYNPHD 345
NN + NC NP+D
Sbjct: 102 NNYWNTKNCVNPYD 115
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.0 bits (42), Expect = 8.6
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +1
Query: 211 SIDRKSLGPTFRYIIKYNKI*YTHFTLYMNYNNS 312
S+ K++ Y YN Y + NYNN+
Sbjct: 317 SLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNN 350
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.0 bits (42), Expect = 8.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 156 PFHLYFILKVFHSYCCNFIKKTCIFYFVS 70
PF + +LKV+ Y TC F F++
Sbjct: 184 PFTVLPLLKVWGRYTTEGFLTTCSFDFLT 212
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,399
Number of Sequences: 438
Number of extensions: 3618
Number of successful extensions: 31
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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