Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0006
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 140 1e-34
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 71 1e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 56 3e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 46 3e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 42 5e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 37 0.002
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.003
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 31 0.13
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.22
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.2
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 1.6
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 27 2.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.7
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 4.8
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 25 6.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 140 bits (340), Expect = 1e-34
Identities = 73/131 (55%), Positives = 83/131 (63%)
Frame = +2
Query: 92 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGVRHRAK 271
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVG ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 272 XXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSWVSPPEEHPVLLTEAPLNPKATERKMTH 451
+ PEEHP LLTEAPLNPK+ KMT
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 452 IMFPKHFTRPA 484
I+F + F PA
Sbjct: 122 IIF-ETFNAPA 131
Score = 100 bits (239), Expect = 2e-22
Identities = 56/106 (52%), Positives = 63/106 (59%)
Frame = +1
Query: 256 EAQSKRGFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELGVAPRGTPSPAH*GSPQPQGHR 435
EAQSKRG LTLKYPIEHGIV NWDDMEKIWHHTFYNEL VAP P P+ +R
Sbjct: 57 EAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNR 116
Query: 436 EKDDPYHVSKTFYTPRHCSVGIQTVLLAFTPFRGRYPTRDSRLGLS 573
EK + +TF P V IQ VL + R DS G++
Sbjct: 117 EKMTQI-IFETFNAPAF-YVAIQAVLSLYASGRTTGIVLDSGDGVT 160
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 71.3 bits (167), Expect = 1e-13
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Frame = +2
Query: 110 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGVRHRAKXXXXXX 289
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 290 XXXXXXXXXLTGMTWRR-FGIIPSTMSWVSPPEEHPVLLTEAPLNPKATERKMTHIMF 460
+ I S + PEEHP+LLTE PL + K+ +
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFY 129
Score = 50.4 bits (115), Expect = 2e-07
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +1
Query: 253 SEAQSKRGFLTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELGVAPRGTP 393
SEAQ+ RG L ++ PIE GI+ NW DME+IW + + + +L P P
Sbjct: 60 SEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHP 107
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 56.4 bits (130), Expect = 3e-09
Identities = 40/126 (31%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Frame = +2
Query: 98 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGVRHRAK 271
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VG A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 272 XXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSWVSPPEEHPVLLTEAPLNPKATERKMTH 451
+ P +LLTE P+NP A KM
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 452 IMFPKH 469
MF ++
Sbjct: 122 TMFERY 127
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/76 (30%), Positives = 44/76 (57%)
Frame = +1
Query: 214 RDGRYGTEGLLCRSEAQSKRGFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELGVAPRGTP 393
+ G + ++ EA++ R L +KYP+E+GI+ ++++M ++W +TF+ +L + PRG
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 394 SPAH*GSPQPQGHREK 441
P +REK
Sbjct: 103 ILLTEPPMNPVANREK 118
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 46.4 bits (105), Expect = 3e-06
Identities = 34/122 (27%), Positives = 52/122 (42%)
Frame = +2
Query: 95 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGVRHRAKX 274
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYIYKSNPGME 64
Query: 275 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSWVSPPEEHPVLLTEAPLNPKATERKMTHI 454
+T W R+G+ + P EHP+L+TE NP K
Sbjct: 65 IKNAIRNGWVENWDVTVDLW-RYGL---EQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 455 MF 460
MF
Sbjct: 121 MF 122
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 280 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELGVAPRGTP 393
+ +K I +G V NWD +W + +L P P
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHP 100
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 42.3 bits (95), Expect = 5e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +2
Query: 110 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV 250
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55
Score = 39.9 bits (89), Expect = 3e-04
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 283 TLKYPIEHGIVTNWDDMEKIWHHTFYNELGVAP 381
+L YPI HG + NWD ME+ W + + L P
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEP 121
Score = 32.7 bits (71), Expect = 0.042
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2
Query: 380 PEEHPVLLTEAPLNPKATERKMTHIMF 460
PE+H LLTE PLNP IMF
Sbjct: 121 PEDHYFLLTEPPLNPPENRENTAEIMF 147
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 37.1 bits (82), Expect = 0.002
Identities = 27/117 (23%), Positives = 48/117 (41%)
Frame = +2
Query: 110 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGVRHRAKXXXXXX 289
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG +
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 290 XXXXXXXXXLTGMTWRRFGIIPSTMSWVSPPEEHPVLLTEAPLNPKATERKMTHIMF 460
++ + + + EHP+ +TE NP MT ++F
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFLKLGIDRMEHPICMTEPLANPTYVRSTMTELLF 139
Score = 29.9 bits (64), Expect = 0.30
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 295 PIEHGIVTNWDDMEKIWHHTFYNELGV 375
P E +++NWD ME++ +TF +LG+
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGI 111
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 95 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 196
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 31.1 bits (67), Expect = 0.13
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = -1
Query: 327 IPVSDDSVFDGVFEGQETSFALCLTPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 148
+P + +V ETSFAL T S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 147 PALHIP 130
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.22
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -1
Query: 258 LTPT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 91
+ PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 399 IPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 436 EKDDPYHVSKTFYTPRHCSVGIQTVLL 516
E++ PY ++KTF P++ +G+ L+
Sbjct: 3 EEESPYQLTKTFSNPKNNKIGLAIFLI 29
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 254 LLHKSPSVPYRPSRPDGGAFPRSRGTR 174
L+ K+PS PY SRP A S TR
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 594 EKTPVPPGKSKPRIPGWVTAPKRCKSKKHGLNA 496
+ TPV PG+++P G+ T+ + +H L++
Sbjct: 228 DDTPVTPGEARPAYDGYETSRQIVMDAEHALSS 260
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 231 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 139
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 4.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +1
Query: 295 PIEHGIVTNWDDMEKIWHHTF 357
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 359 TMSWVSPPEEHPVLLTEAPLNPKATERKMTHIMFP 463
T++ SPPE+ P++ + +NP+ +++ + P
Sbjct: 277 TLTTASPPEQIPLMEPQVYVNPQVLPGRLSSLSKP 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,417
Number of Sequences: 5004
Number of extensions: 68630
Number of successful extensions: 197
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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