Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0004
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 140 2e-34
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 72 6e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 66 3e-12
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 66 5e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 48 1e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 42 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 39 7e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.32
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.56
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 1.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 1.7
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 27 2.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.0
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 27 3.0
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.2
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 26 5.2
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 5.2
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 25 9.1
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 25 9.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 140 bits (338), Expect = 2e-34
Identities = 71/129 (55%), Positives = 79/129 (61%)
Frame = +3
Query: 72 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 251
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 252 RVXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQ 431
R + P L P P++ KMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 432 IMFETFNTP 458
I+FETFN P
Sbjct: 122 IIFETFNAP 130
Score = 119 bits (286), Expect = 4e-28
Identities = 51/58 (87%), Positives = 53/58 (91%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
++ ILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEA LNPK NREK
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREK 118
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 72.1 bits (169), Expect = 6e-14
Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRVXXXX 269
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ R
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 270 XXXXXXXXXLTGMTWRR-FGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQIMFET 446
+ I S + P L P + K+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 447 FNTPRHVRLAFKPVL 491
N P + + +PVL
Sbjct: 132 LNVPA-LSFSLQPVL 145
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 66.5 bits (155), Expect = 3e-12
Identities = 24/57 (42%), Positives = 43/57 (75%)
Frame = +2
Query: 251 KSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
+S+L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE +NP NREK
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREK 118
Score = 58.8 bits (136), Expect = 6e-10
Identities = 41/126 (32%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Frame = +3
Query: 78 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 251
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 252 RVXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQ 431
R + PR + L P P A KM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 432 IMFETF 449
MFE +
Sbjct: 122 TMFERY 127
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 65.7 bits (153), Expect = 5e-12
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = +2
Query: 263 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNRE 418
+L YPI HG + NWD ME+ W + + LR PE+H LLTE LNP NRE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRE 140
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 239
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 260 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK 116
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 176
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2
Query: 275 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNP 403
P E +++NWD ME++ +TF +L + EHP+ +TE NP
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 185
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 245
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 284 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
+GI+ +W+ W +L+V P E+ +++TE S NP+ R++
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQ 119
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.32
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 232 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 71
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.1 bits (62), Expect = 0.56
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 273 YLRVRILFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 154
Y + L + L+ K+PS PY SRP A S TR
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = -3
Query: 266 GSGYSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 93
G G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 135 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
G+ PRA F ++ P H G+++ M KD G+E S +
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPK 539
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 609 WGKSGVSLSVKWGTGCGKTPVPGKSQHEYRVVR 511
W K ++ W G GKT P ++Q + +R
Sbjct: 157 WSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIR 189
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 235 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 119
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 3.0
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = -1
Query: 520 GGTDGRRTARSTGLNAKRTWRGVLNVSNMIWVIFLSVALGVEGSLSKQDWVFLGGDTQLI 341
GG G A +NAK WR + ++ ++ FL V L + +L + I
Sbjct: 217 GGAIGAPMATGVDINAKYGWRWLYYINIIVGGFFLIVILIIPETLPIKVITRYENAKGRI 276
Query: 340 VEGMMPNLL 314
VEG+ N L
Sbjct: 277 VEGIPKNNL 285
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 117 TYRSHCLLPTRQLLRRTS*ISEI 49
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 538 VPARIPGGTDGRRTARSTGLNAKRTWRGVLNVS 440
VP G T +G+NA++TW+ + ++S
Sbjct: 55 VPTSKDGNTKAHYLLAGSGINAEQTWKKIESLS 87
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 5.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 275 PIEHGIVTNWDDMEKIWHHTF 337
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 510 SVPPGIRAGTSREPVFFHN 566
S PPG AG P FF+N
Sbjct: 286 SYPPGACAGEGENPRFFYN 304
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 571 HGLWKNTGSREVP 533
HGLWKNT E+P
Sbjct: 115 HGLWKNTIFYEIP 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,366
Number of Sequences: 5004
Number of extensions: 72982
Number of successful extensions: 215
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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