Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0004
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 130 6e-31
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 130 8e-31
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 130 8e-31
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 128 2e-30
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 128 3e-30
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 128 3e-30
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 124 4e-29
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 124 4e-29
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 124 4e-29
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 114 4e-26
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 110 7e-25
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 110 9e-25
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 79 3e-15
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 63 2e-10
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 60 2e-09
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 57 9e-09
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 44 8e-05
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 42 3e-04
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 34 0.091
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 34 0.091
At5g07540.2 68418.m00864 glycine-rich protein (GRP16) oleosin; g... 31 0.64
At1g59970.1 68414.m06755 matrixin family protein similar to SP|P... 29 2.6
At3g12650.1 68416.m01575 expressed protein 28 4.5
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 4.5
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 4.5
At1g16690.2 68414.m01999 transcription factor-related similar to... 28 4.5
At1g16690.1 68414.m01998 transcription factor-related similar to... 28 4.5
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 7.9
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 130 bits (315), Expect = 6e-31
Identities = 69/128 (53%), Positives = 75/128 (58%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 255 VXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQI 434
+ P L P P+A KMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 435 MFETFNTP 458
MFETFNTP
Sbjct: 125 MFETFNTP 132
Score = 121 bits (292), Expect = 3e-28
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
++ ILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEA LNPK NREK
Sbjct: 63 KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 130 bits (314), Expect = 8e-31
Identities = 69/128 (53%), Positives = 75/128 (58%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 255 VXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQI 434
+ P L P P+A KMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 435 MFETFNTP 458
MFETFNTP
Sbjct: 125 MFETFNTP 132
Score = 121 bits (291), Expect = 5e-28
Identities = 52/58 (89%), Positives = 54/58 (93%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
++ ILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEA LNPK NREK
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 130 bits (314), Expect = 8e-31
Identities = 69/128 (53%), Positives = 75/128 (58%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 255 VXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQI 434
+ P L P P+A KMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 435 MFETFNTP 458
MFETFNTP
Sbjct: 125 MFETFNTP 132
Score = 121 bits (291), Expect = 5e-28
Identities = 52/58 (89%), Positives = 54/58 (93%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
++ ILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEA LNPK NREK
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 128 bits (310), Expect = 2e-30
Identities = 68/128 (53%), Positives = 74/128 (57%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 255 VXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQI 434
+ P L P P+A KMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 435 MFETFNTP 458
MFETFN P
Sbjct: 125 MFETFNVP 132
Score = 121 bits (292), Expect = 3e-28
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
++ ILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEA LNPK NREK
Sbjct: 63 KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 128 bits (309), Expect = 3e-30
Identities = 68/128 (53%), Positives = 74/128 (57%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 255 VXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQI 434
+ P L P P+A KMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQI 124
Query: 435 MFETFNTP 458
MFETFN P
Sbjct: 125 MFETFNAP 132
Score = 120 bits (290), Expect = 6e-28
Identities = 51/58 (87%), Positives = 54/58 (93%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
++ ILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEA LNPK NREK
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 128 bits (309), Expect = 3e-30
Identities = 68/128 (53%), Positives = 74/128 (57%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 255 VXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQI 434
+ P L P P+A KMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQI 124
Query: 435 MFETFNTP 458
MFETFN P
Sbjct: 125 MFETFNAP 132
Score = 120 bits (290), Expect = 6e-28
Identities = 51/58 (87%), Positives = 54/58 (93%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
++ ILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEA LNPK NREK
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 124 bits (300), Expect = 4e-29
Identities = 64/128 (50%), Positives = 74/128 (57%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQSKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 255 VXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQI 434
+ P L P P+A KMTQI
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 435 MFETFNTP 458
MFETFN+P
Sbjct: 125 MFETFNSP 132
Score = 120 bits (290), Expect = 6e-28
Identities = 50/58 (86%), Positives = 55/58 (94%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
++ ILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEA LNPK NREK
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREK 120
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 124 bits (300), Expect = 4e-29
Identities = 64/128 (50%), Positives = 74/128 (57%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQSKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 255 VXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQI 434
+ P L P P+A KMTQI
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 435 MFETFNTP 458
MFETFN+P
Sbjct: 125 MFETFNSP 132
Score = 120 bits (290), Expect = 6e-28
Identities = 50/58 (86%), Positives = 55/58 (94%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
++ ILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEA LNPK NREK
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREK 120
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 124 bits (300), Expect = 4e-29
Identities = 64/128 (50%), Positives = 74/128 (57%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQSKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 255 VXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQI 434
+ P L P P+A KMTQI
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 435 MFETFNTP 458
MFETFN+P
Sbjct: 125 MFETFNSP 132
Score = 120 bits (290), Expect = 6e-28
Identities = 50/58 (86%), Positives = 55/58 (94%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
++ ILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEA LNPK NREK
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREK 120
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 114 bits (275), Expect = 4e-26
Identities = 47/58 (81%), Positives = 54/58 (93%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
++ IL+LKYPIEHG+V+NWDDMEKIWHHTFYNELR+ PEEHP+LLTEA LNPK NREK
Sbjct: 64 RRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREK 121
Score = 113 bits (272), Expect = 9e-26
Identities = 59/128 (46%), Positives = 72/128 (56%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD++VGDEAQ++R
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65
Query: 255 VXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQI 434
+ P L P P+ KMTQI
Sbjct: 66 GILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMTQI 125
Query: 435 MFETFNTP 458
MFE+F P
Sbjct: 126 MFESFAFP 133
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 110 bits (265), Expect = 7e-25
Identities = 52/76 (68%), Positives = 56/76 (73%)
Frame = +2
Query: 194 RDGRYGTEGLLCRR*GTEQKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 373
RDG E + G + ILTLK P+EHGIV NWDDMEKIWH+TFYNELRV PEEHP
Sbjct: 35 RDGLNPNESYVGEE-GHANRDILTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHP 93
Query: 374 VLLTEASLNPKGNREK 421
VLLTEA NPK NREK
Sbjct: 94 VLLTEAPYNPKANREK 109
Score = 74.5 bits (175), Expect = 5e-14
Identities = 43/123 (34%), Positives = 56/123 (45%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRVXXXX 269
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ +SYVG+E + R
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEEGHANRDILTL 58
Query: 270 XXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQIMFETF 449
+ P L P P+A KMTQIMFE+F
Sbjct: 59 KDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHPVLLTEAPYNPKANREKMTQIMFESF 118
Query: 450 NTP 458
+ P
Sbjct: 119 DVP 121
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 110 bits (264), Expect = 9e-25
Identities = 46/58 (79%), Positives = 53/58 (91%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
+ ILTL YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPEEHPVLLTEA LNPK +REK
Sbjct: 18 RSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLLTEAPLNPKADREK 75
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/87 (28%), Positives = 33/87 (37%)
Frame = +3
Query: 198 MVGMGQKDSYVGDEAQSKRVXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQS 377
MVGM + D +VGD+A+++ + P
Sbjct: 1 MVGMNENDLFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPV 60
Query: 378 CLLRLPSTPRATERKMTQIMFETFNTP 458
L P P+A KMTQIMFETF P
Sbjct: 61 LLTEAPLNPKADREKMTQIMFETFAVP 87
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 78.6 bits (185), Expect = 3e-15
Identities = 31/60 (51%), Positives = 42/60 (70%)
Frame = +2
Query: 242 TEQKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
+E + L + YP+ +GIV NWDDME +W H FYNEL++ P + +LLT+ LNP NREK
Sbjct: 60 SELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREK 119
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKR 254
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD VG+ R
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELR 63
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/59 (47%), Positives = 35/59 (59%)
Frame = +2
Query: 242 TEQKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNRE 418
+ S L YPIEHG V +WD ME+ W +N LR PE+H LLTE+ L P +RE
Sbjct: 78 SRSSSTHNLHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTPPESRE 136
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 87 ALVVDNGSGMCKAGFAGDDAPRAVFPSIV 173
A+V+DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = +2
Query: 209 GTEGLLCRR*GTEQKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 388
G++ L RR +Q IL+ P + GIVT+WD ++ +W H F N L + P EHP+LL E
Sbjct: 72 GSQALNFRR---DQMEILS---PTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAE 125
Query: 389 ASLNPKGNREK 421
LN + REK
Sbjct: 126 PPLNSQQQREK 136
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 176
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = +2
Query: 275 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKGNREK 421
PI+ GIV++WD ++ IW H F + L + P EHP+LL E LN + REK
Sbjct: 94 PIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREK 142
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 176
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD 236
+V+DNG+ + G+AG+ PR VF +IV RPRH+ G+ + VGD
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKAT----GETVTIVGD 66
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 275 PIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEASLNPKGNREK 421
P + +V ++ ME I + F + +HP+L+TE + NP +R K
Sbjct: 85 PFDSNVVYQFEIMEYILDYAFDRLGANGSGIDHPILITECACNPVQSRSK 134
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 266 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLN-PKGNREKDD 427
++ PI+ G + N D +IW H F + L +AP +LLTEA L+ P R D+
Sbjct: 61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDE 115
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 182
+V+DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 33.9 bits (74), Expect = 0.091
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -1
Query: 211 PIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 74
P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 33.9 bits (74), Expect = 0.091
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 275 PIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEASLNPKGNREK 421
PIE G++ +WD ME + + Y L E +L T+ PK RE+
Sbjct: 57 PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQ 106
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 399 TPRATERKMTQIMFETFN 452
TP+A ++ Q+MFETFN
Sbjct: 99 TPKAIREQLVQLMFETFN 116
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 87 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGR 179
ALVVD GS KAG A D +P + PS + R
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR 34
>At5g07540.2 68418.m00864 glycine-rich protein (GRP16) oleosin;
glycine-rich protein 16 (GRP16) PMID:11431566
Length = 190
Score = 31.1 bits (67), Expect = 0.64
Identities = 20/46 (43%), Positives = 21/46 (45%)
Frame = -1
Query: 589 PFGKMGHGLWKNTGSREVPARIPGGTDGRRTARSTGLNAKRTWRGV 452
P G G G S P GG GRRT RS G +RTWR V
Sbjct: 134 PGGASGGGDKPGGASGGGPGGASGGAVGRRTWRSVG---RRTWRSV 176
>At1g59970.1 68414.m06755 matrixin family protein similar to
SP|P29136 Metalloendoproteinase 1 precursor (EC
3.4.24.-) (SMEP1) {Glycine max}; contains InterPro
accession IPR001818: Matrixin
Length = 360
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -1
Query: 520 GGTDGRRTARSTGLNAKRTWRG-VLNVSNMIWVIFL 416
GG+ R ++STG ++ R WRG ++++S++ IFL
Sbjct: 322 GGSKPSRESQSTGGDSVRRWRGWMISLSSIATCIFL 357
>At3g12650.1 68416.m01575 expressed protein
Length = 238
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 400 VEGSLSKQDWVFLGGDTQLIVEGMMPNL 317
+EG ++D LG +T+ ++EGMM N+
Sbjct: 99 IEGPTVERDLSALGNETRQVLEGMMKNM 126
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/94 (26%), Positives = 32/94 (34%)
Frame = +3
Query: 333 PSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQIMFETFNTPRHVRLAFKPVLLAVRLPS 512
P + +C SPP + PS P T T T +TP H P PS
Sbjct: 53 PPSSNCGSPPYDPSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPS 112
Query: 513 VPPGIRAGTSREPVFFHNPCPILPKGIPHFSPTP 614
P T P +P P P ++S P
Sbjct: 113 HP-----STPSHPSTPSHPTPSHPPSGGYYSSPP 141
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/94 (26%), Positives = 32/94 (34%)
Frame = +3
Query: 333 PSTMSCVSPPRNTQSCLLRLPSTPRATERKMTQIMFETFNTPRHVRLAFKPVLLAVRLPS 512
P + +C SPP + PS P T T T +TP H P PS
Sbjct: 53 PPSSNCGSPPYDPSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPS 112
Query: 513 VPPGIRAGTSREPVFFHNPCPILPKGIPHFSPTP 614
P T P +P P P ++S P
Sbjct: 113 HP-----STPSHPSTPSHPTPSHPPSGGYYSSPP 141
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 245 EQKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 361
E L++KY + H I + W + +IW L+ P
Sbjct: 173 EALKYLSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP 211
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 245 EQKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 361
E L++KY + H I + W + +IW L+ P
Sbjct: 173 EALKYLSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP 211
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 187 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 65
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,900,585
Number of Sequences: 28952
Number of extensions: 424244
Number of successful extensions: 1310
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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