Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2112
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.0  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   4.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 352  DFLQRNNLLSIIRAHEASRCWLPEC 426
            DF++ NN   +    E  +CW  +C
Sbjct: 1930 DFIETNNFDGLDLDWEYPKCWQVDC 1954


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 352 DFLQRNNLLSIIRAHEASRC 411
           + LQ+N +L +IR +   +C
Sbjct: 390 EMLQQNKILKVIRKNLVKKC 409


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = -2

Query: 170 FRRKTSMNAEELLVHKSSQGQAIECVHARIIH 75
           F   T++     +V K     + EC+H  ++H
Sbjct: 61  FGTTTNLKRFYKVVEKILTQSSFECIHLSVLH 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,896
Number of Sequences: 336
Number of extensions: 3117
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)