Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2112
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1246 - 35226759-35226860,35227521-35227715,35227804-352283... 106 2e-23
01_03_0220 - 13905808-13905831,13906694-13906885,13906960-139075... 102 3e-22
03_02_0491 + 8854438-8854657,8854897-8854942,8855268-8855307,885... 101 6e-22
06_03_0542 + 21959533-21959785,21960732-21960846,21962815-219629... 100 8e-22
02_02_0075 - 6572385-6572558,6573416-6573607,6574553-6574630,657... 100 8e-22
10_07_0165 + 13740611-13740706,13741159-13741215,13741523-137416... 99 1e-21
08_02_0893 + 22327485-22327671,22327756-22328627 100 2e-21
06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143 99 2e-21
03_06_0366 + 33408671-33408745,33409342-33409398,33410398-334104... 98 5e-21
01_06_0339 + 28549449-28549529,28549768-28549914,28550027-285500... 97 9e-21
03_01_0473 - 3639533-3639598,3639848-3639955,3640037-3640126,364... 89 3e-18
05_02_0083 + 6450694-6450766,6451391-6451560,6451633-6451704,645... 85 4e-17
05_01_0319 + 2503963-2504176,2504316-2504376,2504691-2504769,250... 62 4e-10
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416... 60 2e-09
09_02_0241 + 6179869-6180116,6180406-6180436,6182038-6182190,618... 42 5e-04
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 39 0.003
08_02_1232 + 25429955-25430392,25430885-25431388,25432657-254328... 38 0.005
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 31 0.70
04_03_0223 - 12938364-12938561,12938762-12938863 28 5.0
01_07_0118 + 41176159-41178909 28 5.0
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 28 6.6
>02_05_1246 -
35226759-35226860,35227521-35227715,35227804-35228363,
35229299-35229476
Length = 344
Score = 106 bits (254), Expect = 2e-23
Identities = 44/89 (49%), Positives = 61/89 (68%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSEKVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINSL 182
NHEC + + F ECK ++S K++ D F+CLP+AAL++++ LC+HGGLSPE+N L
Sbjct: 121 NHECASVNRIYGFYDECKRRFSVKLWKTFTDCFNCLPVAALIDEKILCMHGGLSPELNKL 180
Query: 183 DDIRKLDRFKEPPAFGAMCDLLWSDPLED 269
D I L+R + P G +CDLLWSDP D
Sbjct: 181 DQILNLNRPTDVPDTGLLCDLLWSDPSND 209
>01_03_0220 -
13905808-13905831,13906694-13906885,13906960-13907519,
13910007-13910187
Length = 318
Score = 102 bits (244), Expect = 3e-22
Identities = 41/89 (46%), Positives = 62/89 (69%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSEKVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINSL 182
NHE + + F ECK +++ +++ D F+CLP+AAL++ + LC+HGGLSPE+NSL
Sbjct: 122 NHEDAKINRVYGFYDECKRRFNVRLWKIFCDCFNCLPMAALIDDKILCMHGGLSPELNSL 181
Query: 183 DDIRKLDRFKEPPAFGAMCDLLWSDPLED 269
D I+ ++R E P +G +CDL+WSDP D
Sbjct: 182 DQIKDIERPTEIPDYGLLCDLVWSDPSPD 210
>03_02_0491 +
8854438-8854657,8854897-8854942,8855268-8855307,
8856025-8856090,8856237-8856318,8857036-8857595,
8857681-8857771,8858300-8858316
Length = 373
Score = 101 bits (241), Expect = 6e-22
Identities = 40/90 (44%), Positives = 62/90 (68%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSEKVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINSL 182
NHEC + + F ECK +++ +++ D F+CLP+AAL++ + LC+HGGLSP++ L
Sbjct: 213 NHECASINRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDDKILCMHGGLSPDLTHL 272
Query: 183 DDIRKLDRFKEPPAFGAMCDLLWSDPLEDL 272
D+I+ L R + P G +CDLLWSDP +D+
Sbjct: 273 DEIKSLPRPTDVPDTGLLCDLLWSDPGKDV 302
>06_03_0542 +
21959533-21959785,21960732-21960846,21962815-21962923,
21963027-21963104,21964200-21964391,21964995-21965168
Length = 306
Score = 100 bits (240), Expect = 8e-22
Identities = 46/87 (52%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSE-KVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINS 179
NHE R +T+ + F EC KY V+ D FD LPL AL+ Q C+HGGLSP +++
Sbjct: 114 NHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVENQVFCLHGGLSPSLDT 173
Query: 180 LDDIRKLDRFKEPPAFGAMCDLLWSDP 260
LD+IR LDR +E P G MCDLLWSDP
Sbjct: 174 LDNIRALDRIQEVPHEGPMCDLLWSDP 200
>02_02_0075 -
6572385-6572558,6573416-6573607,6574553-6574630,
6574712-6574820,6575442-6575556,6576280-6576535
Length = 307
Score = 100 bits (240), Expect = 8e-22
Identities = 46/87 (52%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSE-KVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINS 179
NHE R +T+ + F EC KY V+ D FD LPL AL+ Q C+HGGLSP +++
Sbjct: 115 NHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIENQVFCLHGGLSPSLDT 174
Query: 180 LDDIRKLDRFKEPPAFGAMCDLLWSDP 260
LD+IR LDR +E P G MCDLLWSDP
Sbjct: 175 LDNIRALDRIQEVPHEGPMCDLLWSDP 201
>10_07_0165 +
13740611-13740706,13741159-13741215,13741523-13741681,
13742315-13742398,13742496-13742567,13742810-13742881,
13743085-13743125,13743296-13743362,13744033-13744224,
13744314-13744403,13744742-13744849,13745089-13745154
Length = 367
Score = 99 bits (238), Expect = 1e-21
Identities = 45/87 (51%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKY-SEKVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINS 179
NHE R +T+ + F EC KY S V+ D FD PL AL+ + C+HGGLSP I++
Sbjct: 175 NHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIDN 234
Query: 180 LDDIRKLDRFKEPPAFGAMCDLLWSDP 260
LD +R LDR +E P G MCDLLWSDP
Sbjct: 235 LDSVRSLDRVQEVPHEGPMCDLLWSDP 261
>08_02_0893 + 22327485-22327671,22327756-22328627
Length = 352
Score = 99.5 bits (237), Expect = 2e-21
Identities = 40/86 (46%), Positives = 61/86 (70%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSEKVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINSL 182
NHEC + + F ECK ++S +++ D F+CLP+AA+++ + LC+HGGLSP+++SL
Sbjct: 124 NHECASINRIYGFYDECKRRFSVRLWKLFTDCFNCLPVAAVIDDKILCMHGGLSPDLDSL 183
Query: 183 DDIRKLDRFKEPPAFGAMCDLLWSDP 260
D IR++ R + P G +CDLLWSDP
Sbjct: 184 DRIREIARPVDVPDQGLLCDLLWSDP 209
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 313 RGCSYFYSYAACXDFLQRNNLLSIIRAHEASR 408
RG S+ + +FL +++L I RAH+ASR
Sbjct: 221 RGVSFTFGADKVTEFLNKHDLDLICRAHQASR 252
>06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143
Length = 339
Score = 99.1 bits (236), Expect = 2e-21
Identities = 38/90 (42%), Positives = 62/90 (68%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSEKVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINSL 182
NHEC + + F ECK +++ +++ D F+CLP+AAL++ + LC+HGGLSP++ ++
Sbjct: 138 NHECASINRIYGFFDECKRRFNVRIWKVFTDCFNCLPVAALIDDKILCMHGGLSPDLKNM 197
Query: 183 DDIRKLDRFKEPPAFGAMCDLLWSDPLEDL 272
D IR + R + P G +CDLLWSDP +++
Sbjct: 198 DQIRNIARPVDVPDHGLLCDLLWSDPDKEI 227
>03_06_0366 +
33408671-33408745,33409342-33409398,33410398-33410481,
33410575-33410646,33410768-33410839,33411011-33411051,
33411517-33411583,33411673-33411864,33411947-33412036,
33412111-33412218,33412513-33412578
Length = 307
Score = 97.9 bits (233), Expect = 5e-21
Identities = 44/87 (50%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSE-KVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINS 179
NHE R +T+ + F EC KY V+ D FD PL AL+ + C+HGGLSP I +
Sbjct: 115 NHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALVESEIFCLHGGLSPSIET 174
Query: 180 LDDIRKLDRFKEPPAFGAMCDLLWSDP 260
LD+IR DR +E P G MCDLLWSDP
Sbjct: 175 LDNIRNFDRVQEVPHEGPMCDLLWSDP 201
>01_06_0339 +
28549449-28549529,28549768-28549914,28550027-28550094,
28550771-28550828,28551474-28551584,28551668-28551718,
28552308-28552451,28552570-28552665,28552781-28552852,
28553392-28553475
Length = 303
Score = 97.1 bits (231), Expect = 9e-21
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSE-KVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINS 179
NHE R LT+ + F EC+ KY + C D FD L L+A++N LCVHGGLSP++ +
Sbjct: 110 NHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIINGTVLCVHGGLSPDVRT 169
Query: 180 LDDIRKLDRFKEPPAFGAMCDLLWSDPLE 266
+D IR +DR E P G CDL+WSDP E
Sbjct: 170 VDQIRTIDRNCEIPHEGPFCDLMWSDPEE 198
>03_01_0473 -
3639533-3639598,3639848-3639955,3640037-3640126,
3640203-3640394,3640952-3641018,3641472-3641512,
3641762-3641779,3641984-3642055,3642154-3642237,
3642296-3642373,3642703-3642759,3643374-3643469
Length = 322
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +3
Query: 21 LTEYFHFQQECKIKYSE-KVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINSLDDIRK 197
+T+ + F EC KY V+ D FD PL AL+ + C+HGGLSP I +LD +R
Sbjct: 136 ITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIENLDSVRS 195
Query: 198 LDRFKEPPAFGAMCDLLWSDP 260
LDR +E P G MCDLLWSDP
Sbjct: 196 LDRVQEVPHEGPMCDLLWSDP 216
>05_02_0083 +
6450694-6450766,6451391-6451560,6451633-6451704,
6451893-6452043,6452709-6452817,6452906-6453023,
6453214-6453361,6453520-6453768,6454209-6454334,
6454474-6454574,6454728-6454802,6455160-6455219
Length = 483
Score = 85.0 bits (201), Expect = 4e-17
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSEKVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINS 179
NHE + + + + F+ E + K E + +AF CLPLA ++N + VHGGL S +
Sbjct: 288 NHESKSMNKIYGFEGEVRSKLGEAFIELFAEAFCCLPLAHVINNKVFVVHGGLFSVDGVK 347
Query: 180 LDDIRKLDRFKEPPAFGAMCDLLWSDPLEDL 272
L DIR +DRF+EPP G MC++LWSDP L
Sbjct: 348 LSDIRAIDRFREPPEEGLMCEVLWSDPQPQL 378
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 250 GLILLKIWQ*KNAEHFSHNSVRGCSYFYSYAACXDFLQRNNLLSIIRAHE 399
GL+ +W + S RG + FLQ NNL ++R+HE
Sbjct: 364 GLMCEVLWSDPQPQLGRGPSKRGVGLSFGADVTKKFLQENNLDLVVRSHE 413
>05_01_0319 +
2503963-2504176,2504316-2504376,2504691-2504769,
2504861-2504940,2505046-2505140,2505748-2505847,
2506647-2506716,2507657-2507758,2507972-2508053,
2508257-2508304,2508841-2509009,2509089-2509314,
2509961-2510131,2510200-2510438,2510600-2510684,
2510778-2510876,2510954-2511153,2511232-2511307,
2511463-2511675,2511763-2511815,2511999-2512151,
2512474-2512606
Length = 915
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSEK----VYDACMDAFDCLPLAALMNQQFLCVHGGLSPE 170
NHE + F F+ EC + E + F+ LPLAA++ ++ +C+HGG+
Sbjct: 620 NHEAADINALFGFRLECIERMGESDGIWAWTRFNQLFNYLPLAAMIEKKIICMHGGIGRS 679
Query: 171 INSLDDIRKLDR-FKEPPAFGAMCDLLWSDPLEDLAMKKCR 290
IN+++ I KL+R + DLLWSDP E+ +++ R
Sbjct: 680 INTIEQIEKLERPITMDVGSIILMDLLWSDPTENDSVEGLR 720
>12_02_1128 - 26341118-26341204,26341302-26341441,26341567-26341663,
26341755-26341830,26341919-26342118,26342199-26342297,
26342395-26342479,26342786-26343024,26343233-26343403,
26343605-26343848,26343980-26344253,26344755-26344934,
26345342-26345423,26346209-26346278,26346802-26346901,
26347003-26347097,26347181-26347317,26347342-26347420,
26347591-26347651,26348580-26349009
Length = 981
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSEK----VYDACMDAFDCLPLAALMNQQFLCVHGGLSPE 170
NHE + F F+ EC + E+ + F+ LPLAAL+ ++ +C+HGG+
Sbjct: 762 NHEAADINALFGFRIECIERMGERDGIWTWHRMNRLFNWLPLAALIEKKIICMHGGIGRS 821
Query: 171 INSLDDIRKLDR-FKEPPAFGAMCDLLWSDPLEDLAMKKCR 290
IN ++ I L R + DLLWSDP E+ +++ R
Sbjct: 822 INHVEQIENLQRPITMEAGSVVLMDLLWSDPTENDSVEGLR 862
>09_02_0241 +
6179869-6180116,6180406-6180436,6182038-6182190,
6182921-6182983,6183396-6183664,6184055-6184133,
6184213-6184263
Length = 297
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +3
Query: 168 EINSLDDIRKLDRFKEPPAFGAMCDLLWSDP 260
E + IR +DR +E P GAMCDLLWSDP
Sbjct: 159 ESRQITQIRVIDRKQEVPHDGAMCDLLWSDP 189
>03_05_0488 -
24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKYSEK----VYDACMDAFDCLPLAALMNQQFLCVHGGL 161
NHE + F F+ EC + E+ + F+ LPLAAL+ ++ +C+HGG+
Sbjct: 771 NHEAADINALFGFRIECIERMGERDGIWTWHRMNRLFNWLPLAALIEKKIICMHGGI 827
>08_02_1232 +
25429955-25430392,25430885-25431388,25432657-25432803,
25432999-25433106,25433242-25433331
Length = 428
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +3
Query: 3 NHECRHLTEYFHFQQECKIKY---SEKVYDACMDAFDCLPLAALMNQQFLCVHGGL 161
NHE ++ T + F+QE KY +VY + F+ LPLA ++ HGG+
Sbjct: 159 NHESKYCTSVYGFEQEVNFKYKGQGPQVYRKFLRCFEDLPLATIIAGCVYTAHGGI 214
>01_06_1097 + 34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 36 HFQQECKIKYSEKVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINSLD--DIRKLDRF 209
HF+ C + S +V +C+ A D + + N++ ++ E N +D D+++
Sbjct: 873 HFEVGCDVSPSSEVVPSCLQASDSIQSRLVENKEVSNPFISIASETNKVDMIDLKEETAA 932
Query: 210 KEPPAFGAMCDLLWSDPLED 269
P D ++ +P+ED
Sbjct: 933 GYPLDSDDDADKIYPEPMED 952
>04_03_0223 - 12938364-12938561,12938762-12938863
Length = 99
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 96 AFDCLPLAALMNQQFLCVHGG 158
AF C+P AA + Q +CV GG
Sbjct: 75 AFLCMPAAAYITGQIICVDGG 95
>01_07_0118 + 41176159-41178909
Length = 916
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 560 LNWGRSSHGFIF*YSSLIVIXIQNSLVLRXIVSG 459
LN+G+S H FI Y L + NSL+ I G
Sbjct: 486 LNFGKSVHSFILKYGFLTGVSAANSLIHMYICCG 519
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -2
Query: 485 LVLRXIVSGLGKPGCLAFTIHSGSQHLEAS*ARMIESKLFLWRK 354
++ R I S P CL + S++ A +E+ +++WR+
Sbjct: 326 IIYRYITSDQFSPDCLLDCLDLSSEYQALEIANRVEASIYVWRR 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,553,761
Number of Sequences: 37544
Number of extensions: 321080
Number of successful extensions: 671
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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