Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2112
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)             151   3e-37
SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)           65   4e-11
SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)       57   9e-09
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           43   2e-04
SB_36816| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)                    34   0.10 
SB_30974| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.9e-07)         30   1.6  
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               30   1.6  
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               29   2.9  
SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)           29   3.8  
SB_18651| Best HMM Match : UPAR_LY6 (HMM E-Value=0.046)                28   5.0  

>SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score =  151 bits (367), Expect = 3e-37
 Identities = 68/91 (74%), Positives = 77/91 (84%)
 Frame = +3

Query: 12  CRHLTEYFHFQQECKIKYSEKVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINSLDDI 191
           C  +T Y    +  KIKYSE VYDACM++FDCLPLAALMNQQFLCVHGGLSPEI++LDD+
Sbjct: 176 CARVTHYT--LKSGKIKYSEAVYDACMESFDCLPLAALMNQQFLCVHGGLSPEIHTLDDV 233

Query: 192 RKLDRFKEPPAFGAMCDLLWSDPLEDLAMKK 284
           +KLDRFKEPPAFG MCDLLWSDPLED   +K
Sbjct: 234 KKLDRFKEPPAFGPMCDLLWSDPLEDYGNEK 264



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +1

Query: 280 KNAEHFSHNSVRGCSYFYSY 339
           K +EHFSHN+VRGCSYFYS+
Sbjct: 264 KTSEHFSHNTVRGCSYFYSH 283


>SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)
          Length = 173

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +3

Query: 3   NHECRHLTEYFHFQQECKIKYSE-KVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINS 179
           NHE R +T+ + F  EC+ KY     +  C   FD L +AA+++ Q LCVHGGLSP+I +
Sbjct: 111 NHESRQITQVYGFYDECQSKYGNANAWRYCCKVFDLLTVAAIIDGQVLCVHGGLSPDIKT 170

Query: 180 LD 185
           +D
Sbjct: 171 ID 172


>SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)
          Length = 293

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 20/51 (39%), Positives = 33/51 (64%)
 Frame = +3

Query: 3   NHECRHLTEYFHFQQECKIKYSEKVYDACMDAFDCLPLAALMNQQFLCVHG 155
           NHEC  +   + F  ECK +Y+ K++    D F+CLP+AA+++++  C HG
Sbjct: 124 NHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAILDEKIFCCHG 174


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/51 (45%), Positives = 30/51 (58%)
 Frame = +3

Query: 108 LPLAALMNQQFLCVHGGLSPEINSLDDIRKLDRFKEPPAFGAMCDLLWSDP 260
           LPLA ++N +    HGG+S  I  LD I ++DR K       + DLLWSDP
Sbjct: 86  LPLATIVNNKIFVAHGGIS-NITDLDIIERIDRHK-------VLDLLWSDP 128


>SB_36816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = +3

Query: 99  FDCLPLAALMNQQFLCVHGGLSPEINSLDDIRKLDRFKEPPAFGAMCDLLWSDPLED 269
           FD  P +A   ++ L       P + S++ IR++ R  + P  G +CDLLWSDP +D
Sbjct: 33  FDYAPYSACAQRKTLA---NFPPNM-SMEQIRRIMRPTDVPDTGLLCDLLWSDPDKD 85


>SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)
          Length = 465

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +3

Query: 198 LDRFKEPPAFGAMCDLLWSDPLEDL 272
           L+R  + P  G +CDLLWSDP ED+
Sbjct: 114 LERPMDVPDKGLVCDLLWSDPDEDI 138


>SB_30974| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.9e-07)
          Length = 134

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 12  CRHLTEYFHF-QQECKIKYSEKVYDACMDAFDCLPLAALMNQQ 137
           C+   +YF F QQ C +K+    YDA     D  P A++   Q
Sbjct: 37  CKINVKYFPFDQQSCTLKFGSWTYDAGSVDIDTSPTASIKGYQ 79


>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 716

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 12  CRHLTEYFHF-QQECKIKYSEKVYDACMDAFDCLPLAALMNQQ 137
           C+   +YF F QQ C +K+    YDA     D  P A++   Q
Sbjct: 190 CKINVKYFPFDQQSCTLKFGSWTYDAGSVDIDTSPTASIKGYQ 232


>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 275

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 12  CRHLTEYFHF-QQECKIKYSEKVYDA 86
           C+   +YF F QQEC++K+    YDA
Sbjct: 119 CKINVKYFPFDQQECRLKFGSWTYDA 144


>SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)
          Length = 199

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 228 GAMCDLLWSDP 260
           G MCDLLWSDP
Sbjct: 106 GPMCDLLWSDP 116


>SB_18651| Best HMM Match : UPAR_LY6 (HMM E-Value=0.046)
          Length = 81

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 310 VRGCSYFYSYAACXDFLQRNNLLSIIRAHEASRCW 414
           VRGC     +A   DF   +  L  IRA + S CW
Sbjct: 46  VRGCLPLQDFANKKDFCDDHPNLCTIRACDQSMCW 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,809,463
Number of Sequences: 59808
Number of extensions: 362377
Number of successful extensions: 734
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)