Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2112
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.25 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 409 CWLPECIVKAKQPGFPSPDTI--XLSTKLFWMXITIRLL 519
           CWLP  ++   +P   +PD I   LS+   W+     LL
Sbjct: 384 CWLPFFVLALVRPFLKNPDAIPAFLSSLFLWLGYCNSLL 422


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 302 CEKCSAFFHCQIFKRIRPQQVTHGSKC 222
           CE C  FF   I ++I+ +  T   +C
Sbjct: 84  CEGCKGFFRRSIQQKIQYRPCTKNQQC 110


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 486 FGAEXNSIRTGKARLFGFYDT 424
           FG     I   +A  FGFYDT
Sbjct: 179 FGVSVQGIIIYRAAYFGFYDT 199


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 486 FGAEXNSIRTGKARLFGFYDT 424
           FG     I   +A  FGFYDT
Sbjct: 179 FGVSVQGIIIYRAAYFGFYDT 199


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/40 (22%), Positives = 17/40 (42%)
 Frame = -3

Query: 370 CFFGENXSRLHSYRNMSTP*RSYARNVLHFFIAKSSRGSD 251
           C FG N +  + + ++S P R +     +  +     G D
Sbjct: 605 CLFGHNVTLANKFESLSEPLRIHVSPTTYILLKYPISGFD 644


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +1

Query: 409 CWLPECIVKAKQPGFPSPDTIXLSTKLFWM 498
           CWLP  I+    P  P      L   L W+
Sbjct: 318 CWLPFFILYLATPFVPVEPPDILMPALTWL 347


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 5/9 (55%), Positives = 5/9 (55%)
 Frame = +3

Query: 570 HXYWAPHSW 596
           H  W PH W
Sbjct: 175 HWIWTPHGW 183


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 192 GYHLSC*FQEKDLHERRGTVGS 127
           G H+SC F       R G VGS
Sbjct: 116 GLHVSCSFSAGSTIIREGDVGS 137


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 159 LSPEINSLDDIRKLDRFKEPPAFGAMCDLLW 251
           ++  INS+  I K+ R   P +FG +    W
Sbjct: 458 IARHINSVSYIDKVARIVFPASFGLLNICYW 488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,330
Number of Sequences: 438
Number of extensions: 3358
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)