Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2111
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P14883 Cluster: Actin-2; n=75; Eukaryota|Rep: Actin-2 -...    45   0.001
UniRef50_UPI0000E81480 Cluster: PREDICTED: hypothetical protein;...    36   1.1  
UniRef50_A7QKV4 Cluster: Chromosome chr8 scaffold_115, whole gen...    33   4.5  
UniRef50_A2DKQ5 Cluster: Actin 58, putative; n=2; Trichomonas va...    33   4.5  
UniRef50_Q4JSC0 Cluster: Actin; n=13; Coelomata|Rep: Actin - Ano...    33   5.9  
UniRef50_O65314 Cluster: Actin; n=20; Eukaryota|Rep: Actin - Sch...    33   5.9  

>UniRef50_P14883 Cluster: Actin-2; n=75; Eukaryota|Rep: Actin-2 -
           Plasmodium falciparum
          Length = 376

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 42/118 (35%), Positives = 56/118 (47%)
 Frame = +3

Query: 3   PRAVFPLDRGKGPAIXGVMGRVXGQEGLLCRR*XTEQKXGILTLKYLXSNTESSLNWG*H 182
           P+ VFP   G+ P +  +M  +  +E  +      + K GILTLKY   +   + NW   
Sbjct: 27  PKCVFPSIVGR-PKMPNIMIGMEQKECYVGDE--AQNKRGILTLKYPIEHGIVT-NWD-D 81

Query: 183 GRRFXHYTFYNEAACRPPEEHPVPAXLRLXLNPQGPTERKMTQNHVSKHFNTAPXMYV 356
             +  H+TFYNE     PEEHPV       LNP+   E KMTQ  +       P MYV
Sbjct: 82  MEKIWHHTFYNELRV-SPEEHPV-LLTEAPLNPKTNRE-KMTQ--IMFETFDVPAMYV 134


>UniRef50_UPI0000E81480 Cluster: PREDICTED: hypothetical protein;
           n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
           - Gallus gallus
          Length = 278

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +2

Query: 221 CVSAPRGT--PSSCXTEAXPQPPRANREKDDPESCFQTFQHRPXH-VRXPSKXCXLLVPR 391
           C  AP G   P+       P  PR +R+K  P++C Q  +    H  R P+    +  PR
Sbjct: 113 CGEAPAGLCLPNGSDAPRLPAGPRGSRKKSSPQTCLQVARRARGHRARPPAAPRRVAAPR 172

Query: 392 XG 397
            G
Sbjct: 173 HG 174


>UniRef50_A7QKV4 Cluster: Chromosome chr8 scaffold_115, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr8 scaffold_115, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 431

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 108 EQKXGILTLKYLXSNTESSL--NWG*HGRRFXHYTFYNEAACRPPEEHPV 251
           + K  +LTLKY    T+S +  NW   G+   H+TFY E  C  PE H V
Sbjct: 31  QSKKDMLTLKY---PTKSGIVGNWDDKGKTIWHHTFYIE-LCVAPEAHLV 76


>UniRef50_A2DKQ5 Cluster: Actin 58, putative; n=2; Trichomonas
           vaginalis G3|Rep: Actin 58, putative - Trichomonas
           vaginalis G3
          Length = 373

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 31/101 (30%), Positives = 45/101 (44%)
 Frame = +3

Query: 3   PRAVFPLDRGKGPAIXGVMGRVXGQEGLLCRR*XTEQKXGILTLKYLXSNTESSLNWG*H 182
           P++VFP   G   +   ++G   GQ           QK  +L L+    N   S NW   
Sbjct: 25  PKSVFPTIIGSPKSNMQMVG---GQNKDFFVGFEAVQKSDLLVLRQPIENGTIS-NWD-D 79

Query: 183 GRRFXHYTFYNEAACRPPEEHPVPAXLRLXLNPQGPTERKM 305
             +  H+TFYNE     PEEHPV       ++P+   E+K+
Sbjct: 80  IEKIWHHTFYNELLV-APEEHPV-ILAEKPMSPRMNREKKI 118


>UniRef50_Q4JSC0 Cluster: Actin; n=13; Coelomata|Rep: Actin -
           Anopheles gambiae (African malaria mosquito)
          Length = 376

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 35/107 (32%), Positives = 45/107 (42%)
 Frame = +1

Query: 19  PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
           PSIVG+ P       G  +K D+YVGD AQSK+ +   +             DDM E   
Sbjct: 33  PSIVGR-PRHQGVMVGMGNK-DAYVGDEAQSKRGIL--TLKYPIEHGIITNWDDM-EKIW 87

Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
                  LRV P  +   L     P  PK   RE+  +IMF   + P
Sbjct: 88  HHTFYNELRVAPEEHPVLLTE--APLNPK-SNREKMTQIMFETFAAP 131


>UniRef50_O65314 Cluster: Actin; n=20; Eukaryota|Rep: Actin -
           Scherffelia dubia
          Length = 378

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 35/107 (32%), Positives = 45/107 (42%)
 Frame = +1

Query: 19  PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
           PSIVG+ P       G   +KD+YVGD AQSK+ +   +             DDM E   
Sbjct: 35  PSIVGR-PRHQGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGVVSNWDDM-EKIW 89

Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
                  LRV P  +   L     P  PK   RE+  +IMF   + P
Sbjct: 90  HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNVP 133


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,796,855
Number of Sequences: 1657284
Number of extensions: 10536774
Number of successful extensions: 19818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19799
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)