Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2111
(650 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 23 2.2
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 23 2.2
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 23 2.2
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 23 2.2
X97819-1|CAA66399.1| 251|Tribolium castaneum ZEN Tc protein. 23 2.9
AF321227-4|AAK16424.1| 246|Tribolium castaneum Zen protein. 23 2.9
AY884065-1|AAX84206.1| 697|Tribolium castaneum laccase 1 protein. 21 6.7
AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase ... 21 6.7
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 21 6.7
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 21 6.7
AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain tran... 21 6.7
AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia or... 21 6.7
AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia or... 21 6.7
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 23.0 bits (47), Expect = 2.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 453 GWWENSVRRXS 421
GWWEN + R S
Sbjct: 266 GWWENYISRHS 276
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 23.0 bits (47), Expect = 2.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 453 GWWENSVRRXS 421
GWWEN + R S
Sbjct: 266 GWWENYISRHS 276
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 23.0 bits (47), Expect = 2.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 453 GWWENSVRRXS 421
GWWEN + R S
Sbjct: 266 GWWENYISRHS 276
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 23.0 bits (47), Expect = 2.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 453 GWWENSVRRXS 421
GWWEN + R S
Sbjct: 266 GWWENYISRHS 276
>X97819-1|CAA66399.1| 251|Tribolium castaneum ZEN Tc protein.
Length = 251
Score = 22.6 bits (46), Expect = 2.9
Identities = 10/40 (25%), Positives = 16/40 (40%)
Frame = +2
Query: 224 VSAPRGTPSSCXTEAXPQPPRANREKDDPESCFQTFQHRP 343
VS PR +P+ + PQ + D + + H P
Sbjct: 151 VSTPRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAP 190
>AF321227-4|AAK16424.1| 246|Tribolium castaneum Zen protein.
Length = 246
Score = 22.6 bits (46), Expect = 2.9
Identities = 10/40 (25%), Positives = 16/40 (40%)
Frame = +2
Query: 224 VSAPRGTPSSCXTEAXPQPPRANREKDDPESCFQTFQHRP 343
VS PR +P+ + PQ + D + + H P
Sbjct: 142 VSTPRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAP 181
>AY884065-1|AAX84206.1| 697|Tribolium castaneum laccase 1 protein.
Length = 697
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 228 DTQPHCRRYNXKIFSHVIPSL 166
+ PH + Y+ + SHVI L
Sbjct: 200 EDNPHAKLYDYDLSSHVITIL 220
>AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase
protein.
Length = 677
Score = 21.4 bits (43), Expect = 6.7
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 453 GWWENSVRRXS 421
GWWEN V S
Sbjct: 23 GWWENFVSETS 33
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 21.4 bits (43), Expect = 6.7
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 453 GWWENSVRRXS 421
GWWEN V S
Sbjct: 256 GWWENFVSETS 266
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
CHS2 protein.
Length = 1464
Score = 21.4 bits (43), Expect = 6.7
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 453 GWWENSVRRXS 421
GWWEN V S
Sbjct: 256 GWWENFVSETS 266
>AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain
transcription factor Maxillopediaprotein.
Length = 523
Score = 21.4 bits (43), Expect = 6.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 273 LNPQGPTERKMTQNHVSKHFNTAP 344
+N + T+RK TQ H + N P
Sbjct: 290 MNQEYRTDRKHTQQHYQMNQNMYP 313
>AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia
ortholog protein.
Length = 471
Score = 21.4 bits (43), Expect = 6.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 273 LNPQGPTERKMTQNHVSKHFNTAP 344
+N + T+RK TQ H + N P
Sbjct: 238 MNQEYRTDRKHTQQHYQMNQNMYP 261
>AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia
ortholog protein.
Length = 477
Score = 21.4 bits (43), Expect = 6.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 273 LNPQGPTERKMTQNHVSKHFNTAP 344
+N + T+RK TQ H + N P
Sbjct: 421 MNQEYRTDRKHTQQHYQMNQNMYP 444
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,281
Number of Sequences: 336
Number of extensions: 2470
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -