Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2111
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 35 0.049
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 34 0.11
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 34 0.11
12_02_1282 + 27528159-27529148,27529549-27529614 33 0.20
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 33 0.20
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 33 0.20
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 33 0.20
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 33 0.20
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 33 0.26
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 31 1.1
08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,469... 30 1.8
05_07_0024 + 27125474-27125764 29 3.2
05_02_0070 - 6327352-6327582,6327684-6327944 29 4.2
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 28 5.6
12_01_0467 + 3657320-3657992,3658077-3658342 27 9.8
05_06_0218 + 26475951-26476252,26476361-26476522,26476769-26476970 27 9.8
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 35.1 bits (77), Expect = 0.049
Identities = 36/107 (33%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVSNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 89 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 132
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 33.9 bits (74), Expect = 0.11
Identities = 35/107 (32%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVSNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF + + P
Sbjct: 89 HHTFYNELRVAPEEHPALLTE--APLNPKA-NREKMTQIMFESFNVP 132
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 33.9 bits (74), Expect = 0.11
Identities = 36/107 (33%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVSNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + +L P PK RE+ +IMF S P
Sbjct: 89 HHTFYNELRVAPEEHP--ILLTEAPLNPKA-NREKMTQIMFETFSVP 132
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 33.1 bits (72), Expect = 0.20
Identities = 35/107 (32%), Positives = 45/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVNNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF + P
Sbjct: 89 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNAP 132
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 33.1 bits (72), Expect = 0.20
Identities = 35/107 (32%), Positives = 45/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVSNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF + P
Sbjct: 89 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNVP 132
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 33.1 bits (72), Expect = 0.20
Identities = 35/107 (32%), Positives = 45/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVSNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF + P
Sbjct: 89 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNVP 132
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 33.1 bits (72), Expect = 0.20
Identities = 35/107 (32%), Positives = 45/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVSNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF + P
Sbjct: 89 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNVP 132
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 33.1 bits (72), Expect = 0.20
Identities = 35/107 (32%), Positives = 45/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 33 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVNNWDDM-EKIW 87
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF + P
Sbjct: 88 HHTFYNELRVAPEEHPVLLTE--APMNPKA-NREKMTQIMFETFNCP 131
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 32.7 bits (71), Expect = 0.26
Identities = 35/107 (32%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVNNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + +L P PK RE+ +IMF + P
Sbjct: 89 HHTFYNELRVAPEEHP--ILLTEAPLNPKA-NREKMTQIMFETFNAP 132
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 30.7 bits (66), Expect = 1.1
Identities = 34/107 (31%), Positives = 45/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQ+K+ + + DDM E
Sbjct: 33 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQAKRGIL--TLKYPIEHGIVNNWDDM-EKIW 87
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF + P
Sbjct: 88 HHTFYNELRVAPEDHPVLLTE--APLNPKA-NREKMTQIMFETFNCP 131
>08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,
4695422-4696072,4696179-4696395,4697040-4697111,
4697167-4697257,4697367-4698363,4698914-4699044,
4699584-4699802,4700110-4700805,4700912-4701121,
4701606-4701710
Length = 1271
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 258 KQELGVPRGADTQPHCRRYNXKIFSHVIPSLVTIPCSN--XGI*GSGYXLFAL 106
++ LGV T P C+ +F++++ LV+I N G+ S + +F L
Sbjct: 943 RKHLGVIASRATMPQCQAVRLYVFANILALLVSISLDNLITGVIQSSFAIFGL 995
>05_07_0024 + 27125474-27125764
Length = 96
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 4 LAPCSPSIVGKAPPSXA 54
L PC+P+IVG +PP+ A
Sbjct: 35 LTPCAPAIVGNSPPTAA 51
>05_02_0070 - 6327352-6327582,6327684-6327944
Length = 163
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 227 SAPRGTP-SSCXTEAXPQPPRANREKDDPES 316
S P TP SS + + P PP AN +D P S
Sbjct: 10 STPGSTPPSSLPSTSPPPPPAANATEDQPSS 40
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 387 PVSVVPPGIXAWTXGXRSFPTTLXXXXKGFXTSPTAXP-WGFGLXPGSXP 533
P + PPG T G +++P + G T P P +G P + P
Sbjct: 478 PAPIPPPGTAPSTDGAQNYPPGVTPPSSGAPTQPVPAPVYGTSGAPNAPP 527
>12_01_0467 + 3657320-3657992,3658077-3658342
Length = 312
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 139 YLRVRIPSFCSVXHLLHKSPSCPXTRPITPXMAGPFPRSRGNTAR 5
YL +R+P CS + S S P TR I P P R
Sbjct: 187 YLTLRVPKACSAAPDIPTSSSWPPTRDIPSSSTQPPPEQAKQNRR 231
>05_06_0218 + 26475951-26476252,26476361-26476522,26476769-26476970
Length = 221
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 254 CXTEAXPQPPRANREKDDPESCFQTFQHRPXHV 352
C TE R R+KDDP T++ HV
Sbjct: 160 CSTEGCNVKKRVERDKDDPSYVVTTYEGTHNHV 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,689,322
Number of Sequences: 37544
Number of extensions: 326221
Number of successful extensions: 706
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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