Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2111
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.066
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.066
SB_56| Best HMM Match : Actin (HMM E-Value=0)                          35   0.066
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                       35   0.066
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.066
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  

>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 36/107 (33%), Positives = 46/107 (42%)
 Frame = +1

Query: 19  PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
           PSIVG+ P       G   +KDSYVGD AQSK+ +   +             DDM E   
Sbjct: 33  PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 87

Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
                  LRV P  +   L     P  PK   RE+  +IMF   ++P
Sbjct: 88  HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNSP 131


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 36/107 (33%), Positives = 46/107 (42%)
 Frame = +1

Query: 19  PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
           PSIVG+ P       G   +KDSYVGD AQSK+ +   +             DDM E   
Sbjct: 32  PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 86

Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
                  LRV P  +   L     P  PK   RE+  +IMF   ++P
Sbjct: 87  HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNSP 130


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 36/107 (33%), Positives = 46/107 (42%)
 Frame = +1

Query: 19  PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
           PSIVG+ P       G   +KDSYVGD AQSK+ +   +             DDM E   
Sbjct: 32  PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 86

Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
                  LRV P  +   L     P  PK   RE+  +IMF   ++P
Sbjct: 87  HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNSP 130


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 36/107 (33%), Positives = 46/107 (42%)
 Frame = +1

Query: 19  PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
           PSIVG+ P       G   +KDSYVGD AQSK+ +   +             DDM E   
Sbjct: 33  PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 87

Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
                  LRV P  +   L     P  PK   RE+  +IMF   ++P
Sbjct: 88  HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNSP 131


>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 36/107 (33%), Positives = 46/107 (42%)
 Frame = +1

Query: 19  PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
           PSIVG+ P       G   +KDSYVGD AQSK+ +   +             DDM E   
Sbjct: 33  PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 87

Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
                  LRV P  +   L     P  PK   RE+  +IMF   ++P
Sbjct: 88  HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNSP 131


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = +1

Query: 19  PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXV 123
           PSIVG+ P       G   +KDSYVGD AQSK+ +
Sbjct: 32  PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGI 64


>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1513

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 139 YLRVRIPSFCSVXHLLHKSPSCPXT-RPITPXMAGPFPRSRG 17
           +LR+   S  S   L H++PS P T R  T  M+GPF  + G
Sbjct: 606 FLRLSFGSIQSEASLSHETPSTPQTPRSPTSSMSGPFDNAFG 647


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,026,048
Number of Sequences: 59808
Number of extensions: 334028
Number of successful extensions: 591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)