Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2111
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 36 0.019
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 36 0.019
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 36 0.019
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 36 0.019
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 36 0.019
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 36 0.019
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 36 0.019
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 36 0.019
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 36 0.019
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 36 0.025
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 34 0.10
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 31 0.94
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 31 0.94
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 31 0.94
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 31 0.94
AL110479-20|CAB54371.1| 338|Caenorhabditis elegans Hypothetical... 31 0.94
U70849-6|ABD63227.1| 284|Caenorhabditis elegans Phosphatidylser... 29 2.2
U70849-5|AAF99922.2| 400|Caenorhabditis elegans Phosphatidylser... 29 2.2
Z35602-2|CAA84671.3| 824|Caenorhabditis elegans Hypothetical pr... 28 5.0
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 28 5.0
Z82280-8|CAB05269.3| 280|Caenorhabditis elegans Hypothetical pr... 28 6.6
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 36.3 bits (80), Expect = 0.019
Identities = 37/107 (34%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KDSYVGD AQSK+ + + DDM E
Sbjct: 33 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 87
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 88 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 131
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 36.3 bits (80), Expect = 0.019
Identities = 37/107 (34%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KDSYVGD AQSK+ + + DDM E
Sbjct: 33 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 87
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 88 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 131
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 36.3 bits (80), Expect = 0.019
Identities = 37/107 (34%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KDSYVGD AQSK+ + + DDM E
Sbjct: 33 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 87
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 88 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 131
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 36.3 bits (80), Expect = 0.019
Identities = 37/107 (34%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KDSYVGD AQSK+ + + DDM E
Sbjct: 33 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 87
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 88 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 131
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 36.3 bits (80), Expect = 0.019
Identities = 37/107 (34%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KDSYVGD AQSK+ + + DDM E
Sbjct: 33 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 87
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 88 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 131
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 36.3 bits (80), Expect = 0.019
Identities = 37/107 (34%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KDSYVGD AQSK+ + + DDM E
Sbjct: 33 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 87
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 88 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 131
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 36.3 bits (80), Expect = 0.019
Identities = 37/107 (34%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KDSYVGD AQSK+ + + DDM E
Sbjct: 33 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 87
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 88 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 131
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 36.3 bits (80), Expect = 0.019
Identities = 37/107 (34%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KDSYVGD AQSK+ + + DDM E
Sbjct: 19 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 73
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 74 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 117
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 36.3 bits (80), Expect = 0.019
Identities = 37/107 (34%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KDSYVGD AQSK+ + + DDM E
Sbjct: 33 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 87
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 88 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 131
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 35.9 bits (79), Expect = 0.025
Identities = 36/107 (33%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KDSYVGD AQSK+ + + DDM E
Sbjct: 32 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIW 86
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LR+ P + L P PK RE+ +IMF +TP
Sbjct: 87 HHTFYNELRIAPEEHPVLLTE--APLNPK-SNREKMTQIMFETFNTP 130
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 33.9 bits (74), Expect = 0.10
Identities = 30/88 (34%), Positives = 38/88 (43%)
Frame = +1
Query: 76 KKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFXIIPSTMRLRVGPPRNTQFL 255
+KDSYVGD AQSK+ + + DDM E LRV P + L
Sbjct: 6 QKDSYVGDEAQSKRGIL--TLKYPIEHGIVTNWDDM-EKIWHHTFYNELRVAPEEHPVLL 62
Query: 256 LX*GXPSTPKGQQRER*PRIMFPNISTP 339
P PK RE+ +IMF +TP
Sbjct: 63 TE--APLNPKA-NREKMTQIMFETFNTP 87
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXV 123
PSIVG+ P G +KDSYVGD AQSK+ +
Sbjct: 33 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGI 65
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 3 PRAVFPLDRGKGPAIXGVMGRVXGQEGLLCRR*XTEQKXGILTLKY 140
PRAVFP G+ P GVM + ++ + + K GILTLKY
Sbjct: 28 PRAVFPSIVGR-PRHQGVMVGMGQKDSYVGDE--AQSKRGILTLKY 70
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXV 123
PSIVG+ P G +KDSYVGD AQSK+ +
Sbjct: 33 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGI 65
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 3 PRAVFPLDRGKGPAIXGVMGRVXGQEGLLCRR*XTEQKXGILTLKY 140
PRAVFP G+ P GVM + ++ + + K GILTLKY
Sbjct: 28 PRAVFPSIVGR-PRHQGVMVGMGQKDSYVGDE--AQSKRGILTLKY 70
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXV 123
PSIVG+ P G +KDSYVGD AQSK+ +
Sbjct: 33 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGI 65
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 3 PRAVFPLDRGKGPAIXGVMGRVXGQEGLLCRR*XTEQKXGILTLKY 140
PRAVFP G+ P GVM + ++ + + K GILTLKY
Sbjct: 28 PRAVFPSIVGR-PRHQGVMVGMGQKDSYVGDE--AQSKRGILTLKY 70
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXV 123
PSIVG+ P G +KDSYVGD AQSK+ +
Sbjct: 33 PSIVGR-PRHQGVMVGMG-QKDSYVGDEAQSKRGI 65
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 3 PRAVFPLDRGKGPAIXGVMGRVXGQEGLLCRR*XTEQKXGILTLKY 140
PRAVFP G+ P GVM + ++ + + K GILTLKY
Sbjct: 28 PRAVFPSIVGR-PRHQGVMVGMGQKDSYVGDE--AQSKRGILTLKY 70
>AL110479-20|CAB54371.1| 338|Caenorhabditis elegans Hypothetical
protein Y105C5B.23 protein.
Length = 338
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 240 PRGADTQPHCRRYNXKIFSHVIPSLVTIP 154
P+ +TQ R+ N K+FS +IP +TIP
Sbjct: 203 PQNPETQETYRKINGKLFSGLIPDELTIP 231
>U70849-6|ABD63227.1| 284|Caenorhabditis elegans Phosphatidylserine
receptor familyprotein 1, isoform b protein.
Length = 284
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 305 HLSLCWPLGVEGKPQXSRNWV 243
+L L WP V+G+P+ S++WV
Sbjct: 182 NLHLVWPKTVKGRPKLSKHWV 202
>U70849-5|AAF99922.2| 400|Caenorhabditis elegans Phosphatidylserine
receptor familyprotein 1, isoform a protein.
Length = 400
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 305 HLSLCWPLGVEGKPQXSRNWV 243
+L L WP V+G+P+ S++WV
Sbjct: 298 NLHLVWPKTVKGRPKLSKHWV 318
>Z35602-2|CAA84671.3| 824|Caenorhabditis elegans Hypothetical
protein R13G10.2 protein.
Length = 824
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 224 VSAPRGTPSSCXTEAXPQPPRANREKDDPESCFQTFQHRP 343
+SA + + C + + P+ R ++D E CF F H P
Sbjct: 153 LSAQQLSDFKCDCASTIESPKIERVREDSEWCFNEFGHPP 192
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 245 PSSCXTEAXPQPPRANREKDDPESCFQTFQHRP 343
P TEA PP N+ +DPES + P
Sbjct: 744 PMEAFTEASEAPPPPNQGSEDPESILEQLAMEP 776
>Z82280-8|CAB05269.3| 280|Caenorhabditis elegans Hypothetical
protein R05A10.8 protein.
Length = 280
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 240 PRGADTQPHCRRYNXKIFSHVIPSLVTIP 154
P+ TQ R+ N K+F+ IP +TIP
Sbjct: 154 PQNQQTQESYRKINGKLFTGKIPDELTIP 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,916,779
Number of Sequences: 27780
Number of extensions: 247895
Number of successful extensions: 522
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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