Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2111
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 36 0.031
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 35 0.041
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 35 0.041
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 35 0.041
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 33 0.12
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 33 0.12
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 33 0.12
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 33 0.16
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 33 0.22
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 33 0.22
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 29 2.7
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 35.5 bits (78), Expect = 0.031
Identities = 27/63 (42%), Positives = 32/63 (50%)
Frame = +3
Query: 168 NWG*HGRRFXHYTFYNEAACRPPEEHPVPAXLRLXLNPQGPTERKMTQNHVSKHFNTAPX 347
NW + HYTFYNE PEEHPV NP+ E KMTQ + + F+ P
Sbjct: 69 NWD-DMEKIWHYTFYNELRV-DPEEHPV-LLTEAPYNPKANRE-KMTQ-IMFESFD-VPA 122
Query: 348 MYV 356
MYV
Sbjct: 123 MYV 125
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 35.1 bits (77), Expect = 0.041
Identities = 36/107 (33%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVNNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 89 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 132
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 35.1 bits (77), Expect = 0.041
Identities = 36/107 (33%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVNNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 89 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 132
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 35.1 bits (77), Expect = 0.041
Identities = 36/107 (33%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVSNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF +TP
Sbjct: 89 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNTP 132
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 33.5 bits (73), Expect = 0.12
Identities = 33/107 (30%), Positives = 47/107 (43%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PS+VG+ P G ++KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSVVGR-PRHHGVMVGM-NQKDAYVGDEAQSKRGIL--TLKYPIEHGVVSNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LR+ P + L P PK RE+ +IMF ++P
Sbjct: 89 HHTFYNELRIAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNSP 132
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 33.5 bits (73), Expect = 0.12
Identities = 33/107 (30%), Positives = 47/107 (43%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PS+VG+ P G ++KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSVVGR-PRHHGVMVGM-NQKDAYVGDEAQSKRGIL--TLKYPIEHGVVSNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LR+ P + L P PK RE+ +IMF ++P
Sbjct: 89 HHTFYNELRIAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNSP 132
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 33.5 bits (73), Expect = 0.12
Identities = 33/107 (30%), Positives = 47/107 (43%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PS+VG+ P G ++KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSVVGR-PRHHGVMVGM-NQKDAYVGDEAQSKRGIL--TLKYPIEHGVVSNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LR+ P + L P PK RE+ +IMF ++P
Sbjct: 89 HHTFYNELRIAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNSP 132
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 33.1 bits (72), Expect = 0.16
Identities = 35/107 (32%), Positives = 45/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVSNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + L P PK RE+ +IMF + P
Sbjct: 89 HHTFYNELRVAPEEHPVLLTE--APLNPKA-NREKMTQIMFETFNVP 132
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 32.7 bits (71), Expect = 0.22
Identities = 35/107 (32%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVNNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + +L P PK RE+ +IMF + P
Sbjct: 89 HHTFYNELRVAPEEHP--ILLTEAPLNPKA-NREKMTQIMFETFNAP 132
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 32.7 bits (71), Expect = 0.22
Identities = 35/107 (32%), Positives = 46/107 (42%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PSIVG+ P G +KD+YVGD AQSK+ + + DDM E
Sbjct: 34 PSIVGR-PRHTGVMVGMG-QKDAYVGDEAQSKRGIL--TLKYPIEHGIVNNWDDM-EKIW 88
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LRV P + +L P PK RE+ +IMF + P
Sbjct: 89 HHTFYNELRVAPEEHP--ILLTEAPLNPKA-NREKMTQIMFETFNAP 132
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 29.1 bits (62), Expect = 2.7
Identities = 32/107 (29%), Positives = 48/107 (44%)
Frame = +1
Query: 19 PSIVGKAPPSXA*WXGYXDKKDSYVGDXAQSKKXVS*PSXXXXXXXXXXXXGDDMGEDFX 198
PS+VG+ P G D+KD++VGD AQ+++ + S DDM E
Sbjct: 35 PSVVGR-PRHRGVMVGM-DEKDTFVGDEAQARRGIL--SLKYPIEHGVVSNWDDM-EKIW 89
Query: 199 IIPSTMRLRVGPPRNTQFLLX*GXPSTPKGQQRER*PRIMFPNISTP 339
LR+ P + +L P PK RE+ +IMF + + P
Sbjct: 90 HHTFYNELRLEPEEHP--ILLTEAPLNPK-VNREKMTQIMFESFAFP 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,458,388
Number of Sequences: 28952
Number of extensions: 228681
Number of successful extensions: 406
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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