Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2109
         (550 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24048 Cluster: Sodium/potassium-transporting ATPase su...    36   0.47 
UniRef50_Q4T8X9 Cluster: Chromosome undetermined SCAF7707, whole...    36   0.62 
UniRef50_Q7PMF4 Cluster: ENSANGP00000006015; n=2; Culicidae|Rep:...    36   0.62 
UniRef50_Q4SNW2 Cluster: Chromosome 15 SCAF14542, whole genome s...    34   2.5  
UniRef50_Q9NW07 Cluster: Zinc finger protein 358; n=12; Eutheria...    34   2.5  
UniRef50_UPI0000DA417A Cluster: PREDICTED: hypothetical protein;...    33   3.3  
UniRef50_UPI00005A0F95 Cluster: PREDICTED: similar to MICAL-like...    33   4.4  
UniRef50_Q857L6 Cluster: Gp4; n=1; Mycobacterium phage Bxz2|Rep:...    33   5.8  
UniRef50_UPI0000DA3CCD Cluster: PREDICTED: hypothetical protein;...    32   7.6  
UniRef50_A6RA77 Cluster: Predicted protein; n=1; Ajellomyces cap...    32   7.6  

>UniRef50_Q24048 Cluster: Sodium/potassium-transporting ATPase
           subunit beta-2; n=13; Endopterygota|Rep:
           Sodium/potassium-transporting ATPase subunit beta-2 -
           Drosophila melanogaster (Fruit fly)
          Length = 323

 Score = 36.3 bits (80), Expect = 0.47
 Identities = 29/99 (29%), Positives = 38/99 (38%)
 Frame = +2

Query: 98  LERFTMYYRGERXHLYPDPQKVKPVHLDPEDQASSVEXQDLVGQK*HXSXFIFYSALAIL 277
           ++ F  YY   R    P  + +K +  D ED +      D    K       FY  LA L
Sbjct: 9   IDGFQQYY--SRPPERPKKKSLKQMVYDSEDNSYFGRSMDSWA-KIGIFYVAFYGVLAAL 65

Query: 278 VRYLXWTFLQLXGR*XTRMGSSREAXFGTTPGLGLKPTP 394
           V    W F Q       +    R +  GT PGLG +P P
Sbjct: 66  VAICMWAFFQTLDPRIPKWTLDR-SLIGTNPGLGFRPLP 103


>UniRef50_Q4T8X9 Cluster: Chromosome undetermined SCAF7707, whole
            genome shotgun sequence; n=2; Tetraodon nigroviridis|Rep:
            Chromosome undetermined SCAF7707, whole genome shotgun
            sequence - Tetraodon nigroviridis (Green puffer)
          Length = 1252

 Score = 35.9 bits (79), Expect = 0.62
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 112  HVLQGRKXPPLPGSPKSETGSSGPRRPGQ 198
            H LQG + PP P  P  E    GPR PG+
Sbjct: 1098 HNLQGHRPPPEPPGPNQEESGGGPRTPGR 1126


>UniRef50_Q7PMF4 Cluster: ENSANGP00000006015; n=2; Culicidae|Rep:
           ENSANGP00000006015 - Anopheles gambiae str. PEST
          Length = 1246

 Score = 35.9 bits (79), Expect = 0.62
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 67  LRNRTSDLTSFRAIHHVLQGRKXPPLPGSPKSETGSSGP 183
           +RNRT+ + S  ++ H    R  PP P  P++ TG+S P
Sbjct: 734 IRNRTASVQSAPSVQHQPTMRPMPPTPPQPQTPTGTSAP 772


>UniRef50_Q4SNW2 Cluster: Chromosome 15 SCAF14542, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 15 SCAF14542, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 1009

 Score = 33.9 bits (74), Expect = 2.5
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = +1

Query: 124 GRKXPPLPGSPKSETGSSGPRRPGQFCGXTGSSWSKIAXXL 246
           G K    PG  K E G SGP  P    G TGS  SK+   L
Sbjct: 459 GVKGSQGPGGIKGEKGESGPEGPRGLSGETGSKGSKVRCIL 499


>UniRef50_Q9NW07 Cluster: Zinc finger protein 358; n=12;
           Eutheria|Rep: Zinc finger protein 358 - Homo sapiens
           (Human)
          Length = 481

 Score = 33.9 bits (74), Expect = 2.5
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = +2

Query: 359 GTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDGQKKAGXG 538
           GT P    KP P  RS    +  + +DP+A     G      P L  VPSPD        
Sbjct: 382 GTLPDPSSKPLPGSRSTPSPTPVESSDPKAGHD-AGPDLVPSPDLDPVPSPDPDPVPSPD 440

Query: 539 PKXI 550
           P  +
Sbjct: 441 PNPV 444


>UniRef50_UPI0000DA417A Cluster: PREDICTED: hypothetical protein;
           n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 137

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +2

Query: 356 FGTTPGLGLKPTPSGRSPAXSSGTKGNDPRA 448
           +G  PG G  P PS R+PA ++GT G  PRA
Sbjct: 24  WGVWPGEGTPPLPSSRTPAGTAGTTG--PRA 52


>UniRef50_UPI00005A0F95 Cluster: PREDICTED: similar to MICAL-like 2
           isoform 1; n=1; Canis lupus familiaris|Rep: PREDICTED:
           similar to MICAL-like 2 isoform 1 - Canis familiaris
          Length = 864

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +2

Query: 326 TRMGSSREAXFGTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVP 505
           ++M  +RE  F  TPG    P P+GR+PA +      + R  Q    ++KA P      P
Sbjct: 391 SKMQQARERFF-QTPGAAPSPGPAGRAPAPADVPSRANSR-EQALSCLRKALPRLETGAP 448

Query: 506 SPDGQKKAGXGP 541
           +P G+      P
Sbjct: 449 AP-GRSSPATSP 459


>UniRef50_Q857L6 Cluster: Gp4; n=1; Mycobacterium phage Bxz2|Rep:
           Gp4 - Mycobacteriophage Bxz2
          Length = 344

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 121 QGRKXPPLPGSPKSETGSSGPRRPGQFCGXTG 216
           +G + P  P  PK +TGS GP+ P    G TG
Sbjct: 152 EGEQGPTGPQGPKGDTGSQGPQGPKGDTGPTG 183


>UniRef50_UPI0000DA3CCD Cluster: PREDICTED: hypothetical protein;
           n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 283

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 100 RAIHHVLQG-RKXPPLPGSPKSETGSSGPRRPGQFCGXTGSSWSKIAXXLF 249
           RA H +  G R  PPLPG  + E G+   +  G      G  WS     LF
Sbjct: 65  RAKHSLRSGSRSPPPLPGKARPEAGARDCKSKGHPAPDLGRGWSTRRCLLF 115


>UniRef50_A6RA77 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 1020

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
 Frame = +2

Query: 236 HXSXFIFYSALAILVRYLXWTFLQLXGR*XTRMGSSREAXFGTTPGLGLKPTP------S 397
           H + F+   ALA+L  ++ WT ++L G     +   R+     T   G KPTP      S
Sbjct: 257 HLALFVSLVALALLPTFIVWTVIKLKGFDYIIV---RKVSLTATEVAG-KPTPKKAKRAS 312

Query: 398 GRSPAXSSGTKGNDPRAXQ 454
             +PA  +GT GN  R  Q
Sbjct: 313 DVNPARRNGTTGNRMRVSQ 331


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,738,992
Number of Sequences: 1657284
Number of extensions: 10574392
Number of successful extensions: 28453
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28374
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)