Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2109
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   1.4  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   2.4  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   2.4  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.4  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   3.2  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   5.6  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   7.3  

>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 206 PQNWPGLRGPDEPVSLFGDPGRGGSFL 126
           P+ + GLR P + + LFG PG G + L
Sbjct: 402 PELFQGLREPVQGMLLFGPPGTGKTML 428


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 386 PTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDGQKKAG 532
           P P   S + +     ND  +   F  V ++ PP+L   P+P  +  AG
Sbjct: 127 PEPKNDSVSSNIDEFPNDSISSASFLSVPQSTPPYLVSQPTPLNKFLAG 175


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/51 (27%), Positives = 16/51 (31%)
 Frame = -1

Query: 466 PXKLLGCPGVISLGTRXXCWXPPGRGWF*AQPWGSAKXCFSRAAHSGXLAS 314
           P  LL C  V        CW P G   F     G+   C       G + S
Sbjct: 311 PRPLLSCQNVFQKSIGDVCWSPDGLSLFLCSYDGNVLVCTFEKEEFGDMVS 361


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 91  TSFRAIHHVLQGRKXPPLPGSPKSETGSSGPRRPGQF 201
           +S RA+   ++  K  P+P  PK E GSS      +F
Sbjct: 27  SSLRALPPDVKQNKTEPIPFVPKPEEGSSNKSNSSKF 63


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 206 PQNWPGLRGPDEPVSLFGDPGRGGSFL 126
           P  + GLR P   + LFG PG G + L
Sbjct: 482 PDLFQGLREPARGMLLFGPPGTGKTML 508


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 155 QKVKPVHLDPEDQASSVEXQDLVGQK 232
           Q   P ++D ED+A   E QDLV ++
Sbjct: 378 QTYNPQNIDLEDEAVEKEWQDLVAEE 403


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -1

Query: 175 MNRFHFLGIRVEVXPFSPVVHGES 104
           +NRFH +  R+++   + ++H +S
Sbjct: 247 LNRFHVISKRIDIAELNSLIHDKS 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,926
Number of Sequences: 5004
Number of extensions: 36736
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)