Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2109
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 31 0.46
03_05_0291 - 22837412-22838128 29 1.8
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 27 7.5
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 27 7.5
01_02_0122 + 11348686-11348948,11350492-11350587,11351513-113515... 27 7.5
05_04_0182 - 18814642-18815175,18815180-18815195,18815468-188155... 27 9.9
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +2
Query: 362 TTPGLGLKPTPSGRSPAXSSGTKGNDP 442
TTPG PTP G PA SSGT P
Sbjct: 297 TTPGGCSTPTPCGTPPAPSSGTSPTTP 323
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +2
Query: 362 TTPGLG--LKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSP 511
TTPG G PTPS P+ SS T P + PP + SP
Sbjct: 167 TTPGGGGGYSPTPSDTPPSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTSP 218
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = +2
Query: 362 TTPGLG--LKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPP 487
TTPG G PTPS P+ SSG+ P + PP
Sbjct: 245 TTPGGGGGYTPTPSDTPPSPSSGSSPTTPGGGGGYTPTPSDTPP 288
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 362 TTPGLGLKPTPSGRSPAXSSGTKGNDP 442
TTPG G TP P+ SSGT P
Sbjct: 348 TTPGGGSPSTPCDTPPSPSSGTSPTTP 374
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +2
Query: 362 TTPGLG--LKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSP 511
TTPG G PTPS P+ SS T P + PP + SP
Sbjct: 193 TTPGGGGGYTPTPSDAPPSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTSP 244
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +2
Query: 362 TTPGLG--LKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSP 511
TTPG G PTPS P+ SS T P + PP + SP
Sbjct: 219 TTPGGGGGYTPTPSDAPPSPSSDTSPTTPGGGGGYTPTPSDTPPSPSSGSSP 270
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 103 AIHHVLQGRKXPPLPGSPKSETGSSGPRRPGQFCGXTGSSWSK 231
A+ VL G P L SP + G R+P Q CG WSK
Sbjct: 2 AVEEVLDGAA-PMLSSSPAASGEEVGARKPQQRCGG-AEGWSK 42
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 233 IFDQLDPVXPQNWPGLRGPDEPVSLFGDPGRGGSFLP 123
++ QL P+ PG+ GP P+ + G P GG +P
Sbjct: 1654 MYAQLLPLALPAPPGMGGPPPPMGMPGMPPMGGMGMP 1690
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 233 IFDQLDPVXPQNWPGLRGPDEPVSLFGDPGRGGSFLP 123
++ QL P+ PG+ GP P+ + G P GG +P
Sbjct: 1654 MYAQLLPLALPAPPGMGGPPPPMGMPGMPPMGGMGMP 1690
>01_02_0122 +
11348686-11348948,11350492-11350587,11351513-11351524,
11354009-11354699
Length = 353
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 136 PPLPGSPKSETGSSGPRRPGQFCGXTGSS 222
P P SPK E G G CG +GSS
Sbjct: 262 PVGPVSPKPEVGQDGSSAESGCCGPSGSS 290
>05_04_0182 -
18814642-18815175,18815180-18815195,18815468-18815557,
18815838-18815902
Length = 234
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 67 LRNRTSDLTSFRAIHHVLQGRKXPPLPGSPKSETGSSG 180
+R RTS FRA+ L GR P SP++ G G
Sbjct: 118 MRVRTS-AAGFRALVQELTGRNADPSKYSPRASAGDDG 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,700,779
Number of Sequences: 37544
Number of extensions: 308232
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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