Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2109
(550 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 2.5
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 2.5
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 29 2.5
SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11) 29 2.5
SB_15585| Best HMM Match : Collagen (HMM E-Value=2.7e-12) 29 3.3
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_1261| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 27 7.6
SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29) 27 7.6
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 124 GRKXPPLPGSPKSETGSSGPRRPGQFCGXTGSSWSK 231
G P P PK +TG++GP P G TG + K
Sbjct: 49 GATGPTGPTGPKGDTGATGPTGPKGDTGATGPTGPK 84
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 124 GRKXPPLPGSPKSETGSSGPRRPGQFCGXTGSS 222
G P P PK +TG++GP P G TG++
Sbjct: 34 GATGPTGPTGPKGDTGATGPTGPTGPKGDTGAT 66
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 124 GRKXPPLPGSPKSETGSSGPRRPGQFCGXTG 216
G P P PK +TG++GP P G TG
Sbjct: 247 GPTGPTGPTGPKGDTGATGPTGPKGDTGATG 277
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 145 PGSPKSETGSSGPRRPGQFCGXTGSSWSK 231
P PK +TG++GP P G TG + K
Sbjct: 2 PTGPKGDTGATGPTGPKGDTGATGPTGPK 30
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 145 PGSPKSETGSSGPRRPGQFCGXTGSSWSK 231
P PK +TG++GP P G TG + K
Sbjct: 68 PTGPKGDTGATGPTGPKGDTGATGPNGPK 96
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 121 QGRKXPPLPGSPKSETGSSGPRRPGQFCGXTGSSWSK 231
+G P P P +TG++GP P G TG + K
Sbjct: 114 KGDTGPTDPTGPNGDTGATGPTGPKGDTGATGPTGPK 150
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 145 PGSPKSETGSSGPRRPGQFCGXTG 216
P PK +TG++GP P G TG
Sbjct: 80 PTGPKGDTGATGPNGPKGDTGATG 103
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 136 PPLPGSPKSETGSSGPRRPGQFCGXTGSS 222
PP P PK G +GP P CG G++
Sbjct: 809 PPGPPGPKGPPGPNGPLGPPGECGPAGNA 837
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 130 KXPPLPGSPKSETGSSGPR-RPGQ 198
+ PP P PK + G +GPR RPG+
Sbjct: 219 RCPPGPPGPKGKRGETGPRGRPGE 242
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 215 PVXPQNWPGLRGPDEPVSLFGDPGRGGS 132
P P+ WPG+ GP P +G G G+
Sbjct: 1833 PQGPKGWPGVPGPPGPPGAYGWKGYPGN 1860
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 130 KXPPLPGSPKSETGSSGPR-RPGQ 198
+ PP P PK + G +GPR RPG+
Sbjct: 219 RCPPGPPGPKGKRGETGPRGRPGE 242
>SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
Length = 376
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 109 HHVLQGRKXPPLPGSPKSETGSSGPRRPGQFCGXTGSS 222
H+ G++ P P PK +TG +GP P G G S
Sbjct: 243 HNGTAGQQGPQGPPGPKGDTGPAGPGGPRGNQGPPGPS 280
>SB_15585| Best HMM Match : Collagen (HMM E-Value=2.7e-12)
Length = 104
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 124 GRKXPPLPGSPKSETGSSGPRRPGQFCGXTG 216
G P P PK +TG++GP P G TG
Sbjct: 28 GPTGPTGPTGPKGDTGATGPTGPKGDTGATG 58
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 73 NRTSDLTSFRAIHHVLQGRKXPPLPGSPKSETGSSGPRRPG 195
N+ +DLT +A + +Q P LPG+ +GP+ PG
Sbjct: 2090 NQAADLTGPKAPGYSIQNH--PDLPGNANHAADLTGPKAPG 2128
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 73 NRTSDLTSFRAIHHVLQGRKXPPLPGSPKSETGSSGPRRPG 195
N +DLT +A + +Q P LPG+ +GP+ PG
Sbjct: 2116 NHAADLTGPKAPGYSIQNH--PDLPGNGNQAADLTGPKAPG 2154
>SB_1261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 118 LQGRKXPPLPGSPKSETGSSGPRRP 192
L+ + PP P PK +G SG R P
Sbjct: 29 LRSNRAPPHPSHPKGRSGRSGLRHP 53
>SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 76 RTSDLTSFRAIHHVLQGRKXPPLPGSPKSETGSSGP 183
RT+ L +FRA+ G P P+S GS GP
Sbjct: 184 RTNLLEAFRAVAGTPDGSSYSPSSPRPRSTAGSIGP 219
>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 115 VLQGRKXPPLPGSPKSETGSSGPRRPGQFCGXTGSSWSK 231
VL G K PK +TG +GP+ P G TG K
Sbjct: 318 VLSGLKGDTGQQGPKGDTGITGPQGPKGDTGITGPEGPK 356
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 118 LQGRKXPPLPGSPKSETGSSGPRRPGQFCGXTGSS 222
LQG++ PP P + G +GP P G G +
Sbjct: 716 LQGQRGPPGPKGSRGIAGEAGPDGPAGPAGLDGKN 750
>SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29)
Length = 407
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 118 LQGRKXPPLPGSPKSETGSSGPRRPGQFCGXTGSS 222
LQG++ PP P + G +GP P G G +
Sbjct: 47 LQGQRGPPGPKGSRGIAGEAGPDGPAGPAGLDGKN 81
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 115 VLQGRKXPPLPGSPKSETGSSGPRRP 192
V++GR PP P S S + SSGP P
Sbjct: 392 VIEGRSNPPSPSS-SSVSSSSGPPSP 416
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,773,526
Number of Sequences: 59808
Number of extensions: 311957
Number of successful extensions: 772
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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