Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2109
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC014002-1|AAH14002.1| 481|Homo sapiens zinc finger protein 358... 34 0.38
BC003585-1|AAH03585.1| 368|Homo sapiens Unknown (protein for IM... 34 0.38
AK001252-1|BAA91582.1| 481|Homo sapiens protein ( Homo sapiens ... 34 0.38
Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase... 32 1.5
U75308-1|AAC50901.1| 947|Homo sapiens TBP-associated factor pro... 32 1.5
L22548-1|AAA51864.1| 684|Homo sapiens collagen type XVIII alpha... 32 1.5
AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 32 1.5
AL137077-3|CAI11046.1| 949|Homo sapiens TAF4 RNA polymerase II,... 32 1.5
AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 32 1.5
AL109911-3|CAI19183.1| 949|Homo sapiens TAF4 RNA polymerase II,... 32 1.5
AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 32 1.5
BC051867-1|AAH51867.1| 674|Homo sapiens fidgetin-like 1 protein. 30 4.6
BC027856-1|AAH27856.1| 674|Homo sapiens FIGNL1 protein protein. 30 4.6
AK023411-1|BAB14567.1| 254|Homo sapiens protein ( Homo sapiens ... 30 4.6
AK023142-1|BAB14426.1| 674|Homo sapiens protein ( Homo sapiens ... 30 4.6
AC018705-1|AAS01996.1| 674|Homo sapiens unknown protein. 30 4.6
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 30 6.1
X98710-1|CAA67266.1| 193|Homo sapiens COL1A1 and PDGFB fusion t... 30 6.1
X98709-1|CAA67265.1| 139|Homo sapiens COL1A1 and PDGFB fusion t... 30 6.1
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 30 6.1
X07884-1|CAA30731.1| 472|Homo sapiens protein ( Human mRNA for ... 30 6.1
X00820-1|CAA25394.1| 181|Homo sapiens prepro-alpha-1 collagen p... 30 6.1
M36546-1|AAA60150.1| 472|Homo sapiens COL1A1 protein. 30 6.1
M20789-1|AAB59373.1| 589|Homo sapiens alpha-1 type I collagen p... 30 6.1
BC127671-1|AAI27672.1| 331|Homo sapiens LATS2 protein protein. 30 6.1
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 30 6.1
AL356285-1|CAI15861.1| 1088|Homo sapiens LATS, large tumor suppr... 30 6.1
AL161613-1|CAH71526.1| 1088|Homo sapiens LATS, large tumor suppr... 30 6.1
AF207547-1|AAF80561.1| 1088|Homo sapiens serine/threonine kinase... 30 6.1
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 30 6.1
AB209897-1|BAD93134.1| 924|Homo sapiens LATS, large tumor suppr... 30 6.1
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 30 6.1
AB028019-1|BAA92381.1| 1046|Homo sapiens large tumor suppressor ... 30 6.1
>BC014002-1|AAH14002.1| 481|Homo sapiens zinc finger protein 358
protein.
Length = 481
Score = 33.9 bits (74), Expect = 0.38
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +2
Query: 359 GTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDGQKKAGXG 538
GT P KP P RS + + +DP+A G P L VPSPD
Sbjct: 382 GTLPDPSSKPLPGSRSTPSPTPVESSDPKAGHD-AGPDLVPSPDLDPVPSPDPDPVPSPD 440
Query: 539 PKXI 550
P +
Sbjct: 441 PNPV 444
>BC003585-1|AAH03585.1| 368|Homo sapiens Unknown (protein for
IMAGE:3355405) protein.
Length = 368
Score = 33.9 bits (74), Expect = 0.38
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +2
Query: 359 GTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDGQKKAGXG 538
GT P KP P RS + + +DP+A G P L VPSPD
Sbjct: 269 GTLPDPSSKPLPGSRSTPSPTPVESSDPKAGHD-AGPDLVPSPDLDPVPSPDPDPVPSPD 327
Query: 539 PKXI 550
P +
Sbjct: 328 PNPV 331
>AK001252-1|BAA91582.1| 481|Homo sapiens protein ( Homo sapiens
cDNA FLJ10390 fis, clone NT2RM4000104, moderately
similar to ZINC FINGER PROTEIN 135. ).
Length = 481
Score = 33.9 bits (74), Expect = 0.38
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +2
Query: 359 GTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDGQKKAGXG 538
GT P KP P RS + + +DP+A G P L VPSPD
Sbjct: 382 GTLPDPSSKPLPGSRSTPSPTPVESSDPKAGHD-AGPDLVPSPDLDPVPSPDPDPVPSPD 440
Query: 539 PKXI 550
P +
Sbjct: 441 PNPV 444
>Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase II
transcription factor protein.
Length = 1083
Score = 31.9 bits (69), Expect = 1.5
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = +2
Query: 359 GTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDGQKKAGXG 538
G + G P P+ PA SG G A GVK P + P Q A G
Sbjct: 304 GGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG 363
Query: 539 P 541
P
Sbjct: 364 P 364
>U75308-1|AAC50901.1| 947|Homo sapiens TBP-associated factor
protein.
Length = 947
Score = 31.9 bits (69), Expect = 1.5
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = +2
Query: 359 GTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDGQKKAGXG 538
G + G P P+ PA SG G A GVK P + P Q A G
Sbjct: 168 GGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG 227
Query: 539 P 541
P
Sbjct: 228 P 228
>L22548-1|AAA51864.1| 684|Homo sapiens collagen type XVIII alpha 1
protein.
Length = 684
Score = 31.9 bits (69), Expect = 1.5
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 118 LQGRKXPPLPGSPKSETGSSGPRRPGQF 201
L G + PP P PK E G GP PGQF
Sbjct: 219 LPGNQGPPGPKGPKGEVGPPGP--PGQF 244
>AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 31.9 bits (69), Expect = 1.5
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = +2
Query: 359 GTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDGQKKAGXG 538
G + G P P+ PA SG G A GVK P + P Q A G
Sbjct: 306 GGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG 365
Query: 539 P 541
P
Sbjct: 366 P 366
>AL137077-3|CAI11046.1| 949|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 949
Score = 31.9 bits (69), Expect = 1.5
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = +2
Query: 359 GTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDGQKKAGXG 538
G + G P P+ PA SG G A GVK P + P Q A G
Sbjct: 170 GGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG 229
Query: 539 P 541
P
Sbjct: 230 P 230
>AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 31.9 bits (69), Expect = 1.5
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = +2
Query: 359 GTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDGQKKAGXG 538
G + G P P+ PA SG G A GVK P + P Q A G
Sbjct: 306 GGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG 365
Query: 539 P 541
P
Sbjct: 366 P 366
>AL109911-3|CAI19183.1| 949|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 949
Score = 31.9 bits (69), Expect = 1.5
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = +2
Query: 359 GTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDGQKKAGXG 538
G + G P P+ PA SG G A GVK P + P Q A G
Sbjct: 170 GGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG 229
Query: 539 P 541
P
Sbjct: 230 P 230
>AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 31.9 bits (69), Expect = 1.5
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = +2
Query: 359 GTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDGQKKAGXG 538
G + G P P+ PA SG G A GVK P + P Q A G
Sbjct: 306 GGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG 365
Query: 539 P 541
P
Sbjct: 366 P 366
>BC051867-1|AAH51867.1| 674|Homo sapiens fidgetin-like 1 protein.
Length = 674
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 206 PQNWPGLRGPDEPVSLFGDPGRGGSFL 126
P + GLRGP + + LFG PG G + +
Sbjct: 424 PDIFTGLRGPPKGILLFGPPGTGKTLI 450
>BC027856-1|AAH27856.1| 674|Homo sapiens FIGNL1 protein protein.
Length = 674
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 206 PQNWPGLRGPDEPVSLFGDPGRGGSFL 126
P + GLRGP + + LFG PG G + +
Sbjct: 424 PDIFTGLRGPPKGILLFGPPGTGKTLI 450
>AK023411-1|BAB14567.1| 254|Homo sapiens protein ( Homo sapiens
cDNA FLJ13349 fis, clone OVARC1002138, moderately
similar to SAP1 PROTEIN. ).
Length = 254
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 206 PQNWPGLRGPDEPVSLFGDPGRGGSFL 126
P + GLRGP + + LFG PG G + +
Sbjct: 4 PDIFTGLRGPPKGILLFGPPGTGKTLI 30
>AK023142-1|BAB14426.1| 674|Homo sapiens protein ( Homo sapiens
cDNA FLJ13080 fis, clone NT2RP3002007, weakly similar to
SAP1 PROTEIN. ).
Length = 674
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 206 PQNWPGLRGPDEPVSLFGDPGRGGSFL 126
P + GLRGP + + LFG PG G + +
Sbjct: 424 PDIFTGLRGPPKGILLFGPPGTGKTLI 450
>AC018705-1|AAS01996.1| 674|Homo sapiens unknown protein.
Length = 674
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 206 PQNWPGLRGPDEPVSLFGDPGRGGSFL 126
P + GLRGP + + LFG PG G + +
Sbjct: 424 PDIFTGLRGPPKGILLFGPPGTGKTLI 450
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 29.9 bits (64), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGGSFLP 123
PGL GP P G PG GG+F P
Sbjct: 138 PGLPGPPGPPGPPGPPGLGGNFAP 161
>X98710-1|CAA67266.1| 193|Homo sapiens COL1A1 and PDGFB fusion
transcript protein.
Length = 193
Score = 29.9 bits (64), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGGSFLP 123
PGL GP P G PG GG+F P
Sbjct: 43 PGLPGPPGPPGPPGPPGLGGNFAP 66
>X98709-1|CAA67265.1| 139|Homo sapiens COL1A1 and PDGFB fusion
transcript protein.
Length = 139
Score = 29.9 bits (64), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGGSFLP 123
PGL GP P G PG GG+F P
Sbjct: 43 PGLPGPPGPPGPPGPPGLGGNFAP 66
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 29.9 bits (64), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGGSFLP 123
PGL GP P G PG GG+F P
Sbjct: 138 PGLPGPPGPPGPPGPPGLGGNFAP 161
>X07884-1|CAA30731.1| 472|Homo sapiens protein ( Human mRNA for
alpha-1(I) chain of procollagen type I. ).
Length = 472
Score = 29.9 bits (64), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGGSFLP 123
PGL GP P G PG GG+F P
Sbjct: 138 PGLPGPPGPPGPPGPPGLGGNFAP 161
>X00820-1|CAA25394.1| 181|Homo sapiens prepro-alpha-1 collagen
protein.
Length = 181
Score = 29.9 bits (64), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGGSFLP 123
PGL GP P G PG GG+F P
Sbjct: 138 PGLPGPPGPPGPPGPPGLGGNFAP 161
>M36546-1|AAA60150.1| 472|Homo sapiens COL1A1 protein.
Length = 472
Score = 29.9 bits (64), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGGSFLP 123
PGL GP P G PG GG+F P
Sbjct: 138 PGLPGPPGPPGPPGPPGLGGNFAP 161
>M20789-1|AAB59373.1| 589|Homo sapiens alpha-1 type I collagen
protein.
Length = 589
Score = 29.9 bits (64), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGGSFLP 123
PGL GP P G PG GG+F P
Sbjct: 138 PGLPGPPGPPGPPGPPGLGGNFAP 161
>BC127671-1|AAI27672.1| 331|Homo sapiens LATS2 protein protein.
Length = 331
Score = 29.9 bits (64), Expect = 6.1
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 362 TTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPS 508
T+PG GL PTP R P+ GT G+ + Q G P F A P+
Sbjct: 156 TSPGKGLMPTPVTRRPSF-EGT-GDSFASYHQLSGTPYEGPSFGADGPT 202
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 29.9 bits (64), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGGSFLP 123
PGL GP P G PG GG+F P
Sbjct: 138 PGLPGPPGPPGPPGPPGLGGNFAP 161
>AL356285-1|CAI15861.1| 1088|Homo sapiens LATS, large tumor
suppressor, homolog 2 (Drosophila) protein.
Length = 1088
Score = 29.9 bits (64), Expect = 6.1
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 362 TTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPS 508
T+PG GL PTP R P+ GT G+ + Q G P F A P+
Sbjct: 156 TSPGKGLMPTPVTRRPSF-EGT-GDSFASYHQLSGTPYEGPSFGADGPT 202
>AL161613-1|CAH71526.1| 1088|Homo sapiens LATS, large tumor
suppressor, homolog 2 (Drosophila) protein.
Length = 1088
Score = 29.9 bits (64), Expect = 6.1
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 362 TTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPS 508
T+PG GL PTP R P+ GT G+ + Q G P F A P+
Sbjct: 156 TSPGKGLMPTPVTRRPSF-EGT-GDSFASYHQLSGTPYEGPSFGADGPT 202
>AF207547-1|AAF80561.1| 1088|Homo sapiens serine/threonine kinase
KPM protein.
Length = 1088
Score = 29.9 bits (64), Expect = 6.1
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 362 TTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPS 508
T+PG GL PTP R P+ GT G+ + Q G P F A P+
Sbjct: 156 TSPGKGLMPTPVTRRPSF-EGT-GDSFASYHQLSGTPYEGPSFGADGPT 202
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 29.9 bits (64), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGGSFLP 123
PGL GP P G PG GG+F P
Sbjct: 135 PGLPGPPGPPGPPGPPGLGGNFAP 158
>AB209897-1|BAD93134.1| 924|Homo sapiens LATS, large tumor
suppressor, homolog 2 variant protein.
Length = 924
Score = 29.9 bits (64), Expect = 6.1
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 362 TTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPS 508
T+PG GL PTP R P+ GT G+ + Q G P F A P+
Sbjct: 162 TSPGKGLMPTPVTRRPSF-EGT-GDSFASYHQLSGTPYEGPSFGADGPT 208
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 29.9 bits (64), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGGSFLP 123
PGL GP P G PG GG+F P
Sbjct: 141 PGLPGPPGPPGPPGPPGLGGNFAP 164
>AB028019-1|BAA92381.1| 1046|Homo sapiens large tumor suppressor 2
protein.
Length = 1046
Score = 29.9 bits (64), Expect = 6.1
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 362 TTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPS 508
T+PG GL PTP R P+ GT G+ + Q G P F A P+
Sbjct: 115 TSPGKGLMPTPVTRRPSF-EGT-GDSFASYHQLSGTPYEGPSFGADGPT 161
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,233,400
Number of Sequences: 237096
Number of extensions: 1894805
Number of successful extensions: 11640
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 8554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11597
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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