Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2109
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen prot... 30 1.3
Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z69383-11|CAM06588.1| 110|Caenorhabditis elegans Hypothetical p... 29 2.9
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 28 3.9
AF036688-8|AAB88314.2| 482|Caenorhabditis elegans Hypothetical ... 28 3.9
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 28 5.1
Z83115-7|CAJ85758.1| 318|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z83115-6|CAB05558.1| 384|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z81137-12|CAJ85772.1| 318|Caenorhabditis elegans Hypothetical p... 28 5.1
Z81137-11|CAB03472.1| 384|Caenorhabditis elegans Hypothetical p... 28 5.1
U63744-1|AAC47308.1| 572|Caenorhabditis elegans p21-activated k... 28 5.1
U29612-11|AAO61438.1| 523|Caenorhabditis elegans P21-activated ... 28 5.1
U29612-10|AAA68805.2| 572|Caenorhabditis elegans P21-activated ... 28 5.1
U29612-9|AAL65775.1| 569|Caenorhabditis elegans P21-activated k... 28 5.1
D83215-1|BAA11844.1| 569|Caenorhabditis elegans protein kinase ... 28 5.1
AC087794-4|AAG53704.1| 275|Caenorhabditis elegans Hypothetical ... 28 5.1
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 28 5.1
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 6.7
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 6.7
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 27 6.7
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 6.7
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 6.7
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 6.7
CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical ... 27 6.7
AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen prot... 27 6.7
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 27 6.7
Z81059-6|CAB02929.2| 172|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 27 8.9
L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen prote... 27 8.9
>AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen protein
72 protein.
Length = 205
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 215 PVXPQNWPGLRGPDEPVSLFGDPGRGGS 132
P P+ PG GP P L G PG+ G+
Sbjct: 54 PTRPRGQPGYGGPPGPPGLPGQPGQNGN 81
>Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical
protein F15A2.1 protein.
Length = 291
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 215 PVXPQNWPGLRGPDEPVSLFGDPGRGG 135
P P PG+RGP+ P G PG+ G
Sbjct: 153 PPGPDGEPGVRGPNGPPGPNGHPGQPG 179
>Z69383-11|CAM06588.1| 110|Caenorhabditis elegans Hypothetical
protein F13E9.15 protein.
Length = 110
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +1
Query: 124 GRKXPPLPGSPKSETGSSGP---RRPGQFCGXTG 216
G+ PP PG P + SGP ++PGQ G G
Sbjct: 42 GQPQPPQPGQPGGQQTGSGPGAGQQPGQGQGGNG 75
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 221 LDPVXPQNWPGLRGPDEPVSLFGDPGRGGSFL 126
L + P + GLR P + + LFG PG G + L
Sbjct: 196 LPALNPNLFKGLRQPVKGILLFGPPGNGKTLL 227
>AF036688-8|AAB88314.2| 482|Caenorhabditis elegans Hypothetical
protein C24D10.1 protein.
Length = 482
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +2
Query: 338 SSREAXFGTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSP 511
+SR T P G K T R P+ + KG +P Q KK P + PSP
Sbjct: 24 ASRNGDEATKPN-GTK-TSKKRKPSRGNDDKGREPEPTAQSKKAKKMKPKRDSKAPSP 79
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 215 PVXPQNWPGLRGPDEPVSLFGDPGRGGSFLP 123
P PQ PGL GPD G PG GG P
Sbjct: 266 PPGPQGPPGLAGPD------GQPGHGGGGQP 290
>Z83115-7|CAJ85758.1| 318|Caenorhabditis elegans Hypothetical
protein K11D2.4b protein.
Length = 318
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 326 TRMGSSREAXFGTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVP 505
T +S T G G + TPS + + SSG+KG+D Q+ G+ P P
Sbjct: 187 THFSTSSAQQTPTHGGGGGQTTPSSSASSGSSGSKGDD---GAQYNGMLLHPSP---PTP 240
Query: 506 SPDGQK 523
SP+ Q+
Sbjct: 241 SPEQQQ 246
>Z83115-6|CAB05558.1| 384|Caenorhabditis elegans Hypothetical
protein K11D2.4a protein.
Length = 384
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 326 TRMGSSREAXFGTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVP 505
T +S T G G + TPS + + SSG+KG+D Q+ G+ P P
Sbjct: 253 THFSTSSAQQTPTHGGGGGQTTPSSSASSGSSGSKGDD---GAQYNGMLLHPSP---PTP 306
Query: 506 SPDGQK 523
SP+ Q+
Sbjct: 307 SPEQQQ 312
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGGS 132
PGL GPD P G PGR G+
Sbjct: 102 PGLPGPDGPPGKNGAPGRPGA 122
>Z81137-12|CAJ85772.1| 318|Caenorhabditis elegans Hypothetical
protein K11D2.4b protein.
Length = 318
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 326 TRMGSSREAXFGTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVP 505
T +S T G G + TPS + + SSG+KG+D Q+ G+ P P
Sbjct: 187 THFSTSSAQQTPTHGGGGGQTTPSSSASSGSSGSKGDD---GAQYNGMLLHPSP---PTP 240
Query: 506 SPDGQK 523
SP+ Q+
Sbjct: 241 SPEQQQ 246
>Z81137-11|CAB03472.1| 384|Caenorhabditis elegans Hypothetical
protein K11D2.4a protein.
Length = 384
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 326 TRMGSSREAXFGTTPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVP 505
T +S T G G + TPS + + SSG+KG+D Q+ G+ P P
Sbjct: 253 THFSTSSAQQTPTHGGGGGQTTPSSSASSGSSGSKGDD---GAQYNGMLLHPSP---PTP 306
Query: 506 SPDGQK 523
SP+ Q+
Sbjct: 307 SPEQQQ 312
>U63744-1|AAC47308.1| 572|Caenorhabditis elegans p21-activated
kinase CePAK protein.
Length = 572
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 365 TPGLGLKPTPSGRSPAXSSGTKGNDPR 445
TP GLKP P S G K DPR
Sbjct: 148 TPSYGLKPQPYSTSSLPYHGNKIQDPR 174
>U29612-11|AAO61438.1| 523|Caenorhabditis elegans P21-activated
kinase family protein1, isoform c protein.
Length = 523
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 365 TPGLGLKPTPSGRSPAXSSGTKGNDPR 445
TP GLKP P S G K DPR
Sbjct: 99 TPSYGLKPQPYSTSSLPYHGNKIQDPR 125
>U29612-10|AAA68805.2| 572|Caenorhabditis elegans P21-activated
kinase family protein1, isoform a protein.
Length = 572
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 365 TPGLGLKPTPSGRSPAXSSGTKGNDPR 445
TP GLKP P S G K DPR
Sbjct: 148 TPSYGLKPQPYSTSSLPYHGNKIQDPR 174
>U29612-9|AAL65775.1| 569|Caenorhabditis elegans P21-activated
kinase family protein1, isoform b protein.
Length = 569
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 365 TPGLGLKPTPSGRSPAXSSGTKGNDPR 445
TP GLKP P S G K DPR
Sbjct: 145 TPSYGLKPQPYSTSSLPYHGNKIQDPR 171
>D83215-1|BAA11844.1| 569|Caenorhabditis elegans protein kinase
protein.
Length = 569
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 365 TPGLGLKPTPSGRSPAXSSGTKGNDPR 445
TP GLKP P S G K DPR
Sbjct: 145 TPSYGLKPQPYSTSSLPYHGNKIQDPR 171
>AC087794-4|AAG53704.1| 275|Caenorhabditis elegans Hypothetical
protein Y32G9A.5 protein.
Length = 275
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 136 PPLPGSPKSETGSSGPRRPGQFCGXTGSS 222
P PGS + GSS PR PG + +S
Sbjct: 102 PQYPGSSQYPQGSSAPRYPGNYNAFASTS 130
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 136 PPLPGSPKSETGSSGPRRPGQFCGXTGSS 222
P PGS + GSS PR PG + +S
Sbjct: 133 PQYPGSSQYPQGSSAPRYPGNYNAFASTS 161
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 136 PPLPGSPKSETGSSGPRRPGQFCGXTGSS 222
P PGS + GSS PR PG + +S
Sbjct: 164 PQYPGSSQYPQGSSAPRYPGNYNAFASTS 192
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 136 PPLPGSPKSETGSSGPRRPGQFCGXTGSS 222
P PGS + GSS PR PG + +S
Sbjct: 195 PQYPGSSQYPQGSSAPRYPGNYNAFASTS 223
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 206 PQNWPGLRGPDEPVSLFGDPGRGGSFL 126
PQ + G R P + + LFG PG G S++
Sbjct: 141 PQLFTGNRKPWQGILLFGPPGTGKSYI 167
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPG-RGGSFLP 123
PGLRGP P L G PG +G + LP
Sbjct: 1045 PGLRGPQGPSGLPGVPGFKGETGLP 1069
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPG-RGGSFLP 123
PGLRGP P L G PG +G + LP
Sbjct: 1044 PGLRGPQGPSGLPGVPGFKGETGLP 1068
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = +1
Query: 124 GRKXPPLPGSPKSETGSSG----PRRPGQ 198
G + PP PG P+ E G G P PGQ
Sbjct: 177 GPRGPPGPGGPQGEAGEDGGAGNPGTPGQ 205
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 215 PVXPQNWPGLRGPDEPVSLFGDPGRGG 135
P P PG +GP P G+PG G
Sbjct: 148 PAGPAGGPGPKGPPGPPGGHGEPGPAG 174
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPG-RGGSFLP 123
PGLRGP P L G PG +G + LP
Sbjct: 1044 PGLRGPQGPSGLPGVPGFKGETGLP 1068
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPG-RGGSFLP 123
PGLRGP P L G PG +G + LP
Sbjct: 1045 PGLRGPQGPSGLPGVPGFKGETGLP 1069
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPG-RGGSFLP 123
PGLRGP P L G PG +G + LP
Sbjct: 1081 PGLRGPQGPSGLPGVPGFKGETGLP 1105
>CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical
protein C52D10.13 protein.
Length = 281
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 215 PVXPQNWPGLRGPDEPVSLFGDPGRGG 135
PV P PG +GPD G+PG G
Sbjct: 141 PVGPPGPPGPKGPDGESGAPGEPGPAG 167
>AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen protein
104 protein.
Length = 281
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 194 PGLRGPDEPVSLFGDPGRGG 135
PGLRGPD G+PG GG
Sbjct: 162 PGLRGPDGHPGHPGNPGYGG 181
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 206 PQNWPGLRGPDEPVSLFGDPGRGGSFL 126
P + G+R P + V LFG PG G + +
Sbjct: 339 PDVFTGIRAPPKGVLLFGPPGTGKTMI 365
>Z81059-6|CAB02929.2| 172|Caenorhabditis elegans Hypothetical
protein F11F1.7 protein.
Length = 172
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 149 DPQKVKPVHLDPEDQAS-SVEXQDLVGQ 229
DP+ VK VH+D D+ S +E DL+G+
Sbjct: 73 DPEAVKKVHIDLWDEDSLPLESDDLMGR 100
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 206 PQNWPGLRGPDEPVSLFGDPGRGGS 132
P PG GP P G PG+GGS
Sbjct: 142 PAGAPGAPGPQGPNGQPGHPGQGGS 166
>L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen protein
90 protein.
Length = 305
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 224 QLDPVXPQNWPGLRGPDEPVSLFGDPGRGG 135
Q PV PQ +PG+ G P G PG G
Sbjct: 149 QQGPVGPQGFPGVVGTCGPSGDDGQPGPAG 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,519,550
Number of Sequences: 27780
Number of extensions: 237998
Number of successful extensions: 1006
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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